Cynara cardunculus var. scolymus (artichoke): 112506576
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Entry
112506576 CDS
T05604
Name
(RefSeq) SWI/SNF complex subunit SWI3D isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112506576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112506576
03036 Chromosome and associated proteins [BR:
ccav03036
]
112506576
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112506576
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112506576
PBAF complex
112506576
GBAF(ncBAF) complex
112506576
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
112506576
NCBI-ProteinID:
XP_024966488
LinkDB
All DBs
Position
LG 2:64463583..64470980
Genome browser
AA seq
978 aa
AA seq
DB search
MEEKHNSPATATEAATPSSAELPSSRRRGGGLKRKASILSNSNTSTPPPSLSSKRQAREK
PSPVLFPPIHNGPCTRARQQPNYADSTSFWDAVIVNGEGEGSMLGTPVAAKVEEELNARK
EAWEALEAKMEAEYDHLKARDANSQVVPISCGWFSWTKVHQLEEKAMPSFFNGEVENRTP
ELYMEIRNSIMKRFHANPNTEIEAKDLSEISIGELDAKEEVMEFLEYWGLINYHPFPEAD
ITSSMGDAEEAAKVNSLIQNLYEFEVEQLCPPAAPRTSLATLAVPSRLPESMITDESVQP
EGPSVEYHCNSCAADCSRKRYHCQKQADFDLCTDCFNDGKFDSDMSPSDFIIMEPADAAG
ASSGKWTDQETLLLLEALELFSENWNEIAEHVATKTKAQCILHFVQMPIEDTFRDCDDED
DASNKEKAEKKDASPDENDEKKEVDASPEENVDKVEVDVNLKEKTDAVAIKNDTPLGDSP
DMKETDDPKALLNTDALPPDDAPSNNDEPDPSPMDISESADPDKLKDNQENGVNIAVKAL
REAFDAVGSRPSHDGKLSFADAGNPVMAMAAFLSRLVDPNIVTASARTSLKSVSSGGTGL
QLSARHSFVIEHPTDEKKPDNTERDVQEKVEQEGMKDKTDSSRKQEEEKSSLILSDSSVN
DDNDKEGKKESSVSHGEKKNPIPAEVVLPKKGKNVGRKGISASSKKDKDPITEKAIIAAE
TNEQTDQIENPSSSKKESEGSADGGPPLGVSRSTEAPKDEEMVSKSLPSETAEPHQSNTS
LAENTANSEEAGAKDCKNVNKHPLDTKDDPDMHKLTSAAVTAISAAAVKAKFLADQEEDQ
IRQLATSLIEKQLHKLETKLAFFTEMDGVVARVREQMERSKQRLYHERAQIIAARLGMSS
AASTRPMPHPLPNRGGMPFPNAVQRPPSPMSMTPQRPPLSRPMMAPTPFSNPIIPSTVAG
NSAQISNNPDKLSSVGMK
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggaagagaagcacaattcaccggcgaccgccaccgaagcggcaacaccatcgtcggcg
gagctaccatcttcacggagaagaggcggagggctgaagaggaaagcctcgattcttagc
aacagcaacacatcgactccgccaccgtcgttgtcttcgaagcgtcaagctcgtgagaaa
ccatcgccggtgctgttccctccgatccacaatggaccgtgcaccagagctcgtcaacaa
ccaaattacgctgactctacgtcgttttgggacgcggtgattgtgaatggcgaaggggaa
ggttcgatgttggggacgccggtggcggcgaaggtggaggaggaattgaatgctaggaaa
gaagcctgggaggcgttggaagcgaagatggaagctgaatatgaccacttaaaagcgcgt
gatgctaattcccaggttgtaccgatttcttgtggttggttctcatggacaaaagttcat
cagttggaggagaaagcaatgccttctttctttaatggagaagtggaaaatcggactcct
gaactttacatggagataagaaactccattatgaaaagatttcatgccaatcccaatact
gaaattgaggcaaaagatctttctgagatatcaattggagaactggatgctaaggaagag
gtgatggagtttttagagtattgggggttgattaattatcatccattccctgaggcagat
atcactagctcaatgggtgatgctgaagaagctgcaaaagtaaattcattgatacagaat
ctgtatgagtttgaggtggagcaattgtgcccaccagcagctcccaggactagtcttgca
acccttgctgttccatcccggttgccagagtccatgataactgatgaatcagtgcagccc
gagggaccatctgttgagtatcactgcaattcatgtgcagctgattgctctcgtaagcgt
taccactgccagaagcaggcagattttgacttatgtactgattgcttcaacgacggcaag
tttgattccgatatgtccccatctgatttcattattatggagcctgctgatgctgctggg
gcaagtagtgggaagtggacagaccaagagacactgctccttcttgaagccctggaacta
ttcagtgagaactggaatgagattgctgaacatgtggccacaaaaacaaaagctcagtgt
atattgcactttgttcaaatgccaattgaagatactttccgggactgtgatgatgaagat
gatgcaagtaacaaggaaaaagctgagaagaaagatgcaagtcccgatgaaaatgatgag
aaaaaagaagttgatgcaagtccagaggaaaatgtggacaaagtagaagttgatgtaaat
ttgaaggaaaaaacagatgcagttgcaatcaagaatgatacacctctcggtgattcccct
gatatgaaagaaactgatgatcctaaggccctcctcaatactgatgctttgcctccagat
gatgctccatccaataatgatgaacctgatccctctccgatggacatttcagaatcagcg
gatcctgataaactaaaagataatcaggagaatggtgtgaacattgcagtgaaagcactc
agagaagcatttgatgctgtgggttctcgtccttcccatgatgggaaactttcttttgct
gatgctggcaaccctgtcatggcaatggcagcattcttgagtcggttggtggatcccaat
attgtcactgcttcagcccgtacttctctgaaatctgtttctagtggtggcactggcttg
cagctctctgcaaggcattcctttgttattgaacatccaacagatgagaagaaaccagat
aacacagagagagatgtccaagaaaaggtggagcaagagggcatgaaagacaagacagat
tctagcaggaagcaggaagaagaaaagtctagcttaattcttagtgacagttcagtaaat
gatgataatgacaaggaaggtaagaaagaatcttctgtttctcatggagaaaagaaaaat
cctattccagcagaagtggtgcttcccaagaaaggcaagaatgttggtagaaagggcatt
tctgcttcttcaaagaaagacaaggatccaattaccgagaaggcaattattgctgcagaa
actaatgagcaaacagatcaaatcgagaatccttcaagttctaaaaaggagtctgaaggt
tctgctgatggtggtccaccgttaggggtctctcgttctacagaggctccaaaagatgag
gagatggtatctaaatcccttccgtcagagacagcagagcctcaccaatctaacacttca
ctggctgaaaacactgcaaactcagaggaggcaggagcaaaagactgtaagaatgtgaac
aaacacccactagacactaaagatgacccagacatgcataaattaacaagtgcagctgtc
actgccatctctgctgcagcagttaaggcaaaattcttggcagaccaggaagaggaccag
attagacagcttgccacatcgttaatagagaagcagctgcacaagttggagactaagttg
gctttctttaccgagatggatggtgttgtagcgagggttagggaacagatggaaaggtca
aagcaaagactttaccatgaacgtgcccaaataatcgctgccaggctgggcatgtcatct
gccgcttctaccagacctatgccgcatccattacccaacagaggtggaatgccgtttcca
aatgctgtacaaaggccaccaagtccaatgagcatgactcctcaaaggccaccactctca
agaccaatgatggcaccgacacccttttctaacccaattatacctagcacagttgcggga
aactcagctcagatttcaaacaacccggataaactctcatcggttgggatgaagtga
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