Cynara cardunculus var. scolymus (artichoke): 112506775
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Entry
112506775 CDS
T05604
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112506775
Spliceosome [BR:
ccav03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
112506775
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
TPR_16
HAT_Syf1_CNRKL1_C
TPR_19
TPR_12
TPR_MalT
NRDE-2
UTP6_C
ARM_TT21_N
Thiopep_pre
DUF7125
TPR_10
Motif
Other DBs
NCBI-GeneID:
112506775
NCBI-ProteinID:
XP_024966809
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Position
LG 2:2313298..2327479
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AA seq
825 aa
AA seq
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MGDGEAVVSQTSAVDQYSSAPYSASDYHDRSGNAALDSSTGAETTDSGDITAFVGTGNMD
VDHATSHDNDPDTAGKSEVTDVGQQVPLTTAQDVRENLPSVMDTSMDSSHVATYDSSVHG
IDVSDAKSLPAVGAENGVISSYSVHTSASAQQLVDGSALSPEEDRLWNMVRANTLDFNAW
TALIEETEKTSEDNILKIRKVYDAFLAEFPLCYGYWKKYADHEARLGSVDKVVEVYERAV
QGVTYSVDMWLHYCVFAINTYGDPDTIRRLFERGLAYVGTDYLSFPLWDKYIEYEYHQQQ
WSNLAMIYTRILEHPNQQLDRYFNSFRELVASRPLSELRTTEEVATAAKAKEESRNQESE
GEVNPNTVEQSIKPPSASLTEAEDLENYIAIREELYKAAKDFDAKIIDFETAIRRPYYHF
RPLNVAELENWHNYIDFIEGCDDFNKVVKLYERCLIACANYPEYWIRYILCMEASRNVEL
AENALARATQVFVKRHPEIHLFAARFKEHSGDIAGARSSYQLVHTEISPGLLEAIIKHAN
MEYRLGNLEDACSLYEQTIAIEKGKEHSQTLPLLFAQYSRFLYLVLGKVEKAREVLDQAL
ENNQLSKPLLEALIHIESIQSLPKRTDHLDSLVEKFISPGPDNSNAASRVEREELSNIFL
EFLDLFGDAKSIKKADVRHAKLFLPHKSSSESKKRQLEGYLVSDRAKLAKGVVSSASSVT
GTYQATQNQWPAGYGVQPQSWPQATQAQGQQWPSGYTQQAAYGTYNAYGSGYAQPQAPAS
VPQAAAYTSFPASYPVQQAVPQQVSTMTPAQQPAAVAPAYYGTYY
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgggagatggtgaagcagttgtttctcaaacatcggctgtagatcagtattcatctgct
ccttattctgcatctgattatcatgataggagtggaaatgctgctcttgattccagcaca
ggtgctgaaactacagatagtggagatataactgctttcgttggtactggtaacatggat
gtagatcatgccacttctcatgataatgacccagacactgctggtaaatctgaggttaca
gatgttggtcaacaggttccactaactactgcacaagatgttagggagaatcttccaagt
gttatggacacatccatggattcatctcatgttgccacttatgattcttctgtgcatgga
attgatgttagtgatgcgaaatctttgccagcagttggtgctgagaatggggttattagt
tcatacagtgttcatacttctgcatctgcacagcaattggtggatggttctgcattatct
cctgaagaagaccgattatggaacatggtaagagctaatacactggatttcaatgcttgg
actgcactaatagaggagacggagaaaacatcagaggacaacattttgaaaatccgtaaa
gtttatgatgcctttttagctgagtttcctctgtgttatggttattggaagaagtatgct
gatcatgaagctcgtttggggtctgttgataaagttgtggaggtctatgaacgtgcagtt
caaggagtaacatattctgtagatatgtggctgcactactgtgtttttgccataaatacc
tatggagatcctgacaccataaggaggctatttgaacggggtttagcttatgttggaact
gattacctctcttttcctttgtgggataagtacattgaatatgagtatcaccagcagcag
tggtcgaatcttgccatgatctacacacggatattggagcatcctaatcagcagttggat
cgatattttaacagcttcagggaattagttgctagtcgtcctttatctgaattgagaacc
actgaggaagttgctactgcagccaaagcaaaggaggaatcaaggaatcaagaaagtgaa
ggagaggttaatccaaatacagtggagcaatctattaaacctccaagtgcaagcttaaca
gaagctgaagatttggagaactatattgccattagagaagagctatataaggcagccaaa
gattttgatgctaagatcatagattttgaaacagccatcaggaggccctactatcatttt
cggccacttaatgttgcagagcttgaaaactggcataactacattgatttcattgaagga
tgtgatgactttaataaggttgtcaagctatatgaaagatgtctaattgcttgtgcaaat
tatcctgagtactggatacgctacattttgtgcatggaagccagtagaaatgtggaactt
gctgaaaatgcacttgcccgtgctacccaggtgtttgtcaaaaggcatccggagattcac
ctttttgctgctcgatttaaagagcacagtggagacattgcaggagctcgatcatcttat
caactcgtccacactgaaatttctccgggtcttctagaagcaattatcaagcatgctaac
atggaatatcggctgggaaatctggaagatgcttgttctttgtatgagcagactattgca
atcgagaaaggaaaagagcactcacagacattgccccttttgttcgcacagtattctcga
tttctgtacttggttttgggaaaggtagagaaagcaagggaggttctagatcaagcactt
gagaataaccaactctcaaaaccacttttagaggctttaattcatatagaatcaattcaa
tcgctaccaaagcgaactgatcatttagactcactggtggaaaagttcatatcccctgga
cctgataattcaaatgctgcaagtcgtgttgagagagaagagctatctaatattttcttg
gagtttctagatctttttggggatgcaaagtccatcaagaaggctgatgttcggcatgcc
aagcttttcttacctcacaagagttcttcagagtccaagaagcggcaactggagggttat
ttagtctctgatagagccaagcttgcaaaaggtgtggtttcatctgcttcatcagtcaca
ggcacctatcaggccacacagaaccagtggccggcaggttatggtgtgcagcctcaatct
tggccacaagctacgcaagctcaaggacaacaatggccctcaggatacacccaacaggct
gcttatggcacatacaatgcttatggaagtggctacgcccaaccgcaagccccggcatct
gtcccacaagccgctgcttacacttcttttcctgcttcttacccggtccagcaggccgtc
ccacagcaagtttcaacaatgacgcctgcacagcagcctgctgcggtcgcccctgcatat
tatggcacctactattga
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