Cynara cardunculus var. scolymus (artichoke): 112506846
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Entry
112506846 CDS
T05604
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112506846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112506846
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112506846
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112506846
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
112506846
NCBI-ProteinID:
XP_024966913
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All DBs
Position
LG_2
Genome browser
AA seq
666 aa
AA seq
DB search
MSGLLNNSSLNGSASNLQDNTGRPFSASFSTQSGAPSPVFHQSGSVQGLHNLHGSFNVPN
MPGSLGSRNSTTGNVPSSGVQQSSGNLSGGRFASNNIPVALSQMAHGNSHGHSGLTSRGG
MSVVGSPGFSSGTNAIGGSIPGILPTSAAISNRSSVPGVGVSPILGNPGSRITSSAGNIG
GGSSIGRSISSGGGLSMPGLASRLNLNTNSGSGNLGVQGSNRLMGGMLQQASPQVMSMFG
NSYHSGGPLSQNHVQAGNSLNSMGMLNDVNNNDGSPFDINDFPQLSSRPSSSGGAQGQIG
SLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDLHQKDQLHDNNVSMMQSP
HFSMGRSSGFNLGGTFSSHRPQQQQHVPSISSSGVSFSSVNNQDLLHLHGSDMFQGSHSS
YHSQAGGGPGVGLRPLNSPNTVSGVGSYDQLIQQYQQQQNQSQFRLQQIFAASQSYRDQG
MKSMQAAQAAPDRFGLLGLLSVIRMSNPDLTSLALGIDLTTLGLNLNSAENLHKTFGSPW
LDEPTKGAPEFNVPQCYYAKQAPVLNQGYLSKFQLNTLFYIFYSMPKDEAQLYAANELYN
RGWFYHREHHLWFMRAANMEPLVKTNSYERGSYICFDPNTWETIRKDNFVVYYEMLEKRP
SLPPQH
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggttacttaataattcatccctgaacggatcagcttcaaatcttcaagacaac
actgggcgaccattttctgcatctttctcgactcaatctggtgcaccttcccctgttttc
catcaaagtggatctgttcaggggctccataacttacatggtagtttcaatgttcccaac
atgccgggctcacttggatcaagaaattcaacaactggtaatgtaccttcaagtggggtt
caacaatcaagtggaaacctttctggtggaagatttgcatcaaacaatatccctgtagct
ctttctcagatggctcatggcaattcacatggtcactcggggctaactagtagaggtggc
atgagtgttgttggaagccctggatttagtagtggcacaaatgcaattggtggttcaatt
cctggaattctccctacctctgcagcaatcagtaaccggagtagcgttccaggagttggg
gtgtccccgattttaggaaatccaggctctcggattacaagctcggctggaaacattggt
ggcggaagtagcataggaagaagcataagttctggaggaggattgtctatgccgggcctt
gcttctcgcctaaatctgaacactaatagtggatcaggaaatttaggcgtgcagggttca
aatagattaatgggcggtatgcttcaacaagcttccccacaggttatgtctatgtttggg
aattcctatcattcaggtggaccactttctcaaaaccacgttcaagctggaaacagcctt
aattcaatgggaatgttaaatgatgtgaataacaatgatggttccccattcgatataaat
gacttccctcagctgagcagccgaccaagttcctctggaggggcccaaggacaaataggt
tcattacggaaacaaggtcttggtgtgagtcctattgttcagcaaaatcaagaattcagc
atccagaatgaagattttcctgccttaccaggatttaaaggtggcaatgctgattatgct
atggatctgcaccagaaggatcaacttcatgataacaatgtgtcgatgatgcagtctcca
catttctctatgggaaggtcttctggattcaacttgggaggaaccttttcatcacatcgg
ccacagcaacagcaacatgttccatcaattagtagcagcggtgtctccttttcatctgta
aataatcaggatctactccacttgcacggttcagatatgttccaaggatcacattcatcc
tatcattcgcaggctggtggaggtccaggtgtaggtttgagacctttaaactctccgaat
acagtctctggtgttggatcatatgaccaacttatccagcaatatcaacagcaacagaat
caatctcagttccgcctgcagcaaatatttgccgccagtcagtcatatagggatcagggg
atgaaatcgatgcaggctgcccaagctgccccagatcgattcgggctgcttggtctgtta
agcgtaataaggatgagcaatcctgatttaacatctcttgcacttggaattgatttgaca
acacttggtctgaatttgaattcggcagaaaaccttcacaaaacatttggttctccatgg
ctggatgagcctaccaaaggagctccagaattcaacgtgccacaatgttattatgccaaa
caagcaccggtccttaaccaaggatatttatcgaagttccagttgaatactttgttctat
atattttacagcatgccaaaagatgaagcccagttgtatgctgcaaatgagctgtataac
agagggtggttctaccaccgagagcatcacttgtggtttatgcgggctgcaaacatggag
cctctcgttaagacaaattcatacgagagaggatcttacatttgtttcgatccaaacaca
tgggaaacaatacgcaaggataattttgttgtctactatgagatgttggaaaaaagacca
agtctaccacctcaacattga
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