KEGG   Cynara cardunculus var. scolymus (artichoke): 112506849
Entry
112506849         CDS       T05604                                 
Name
(RefSeq) WD-40 repeat-containing protein MSI1
  KO
K10752  histone-binding protein RBBP4
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03082  ATP-dependent chromatin remodeling
ccav03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    112506849
   03083 Polycomb repressive complex
    112506849
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ccav03036]
    112506849
Chromosome and associated proteins [BR:ccav03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     112506849
  Histone modification proteins
   HAT complexes
    HATB complex
     112506849
   HDAC complexes
    Sin3A-HDAC complex
     112506849
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     112506849
    PRC2.2
     112506849
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     112506849
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    112506849
  Chromatin remodeling factors
   NuRD complex
    112506849
   NuRF complex
    112506849
   NuRF complex (fruit fly)
    112506849
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_TEP1_2nd WD40_RFWD3 Beta-prop_EML Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd ANAPC4_WD40 EIF3I Beta-prop_WDR90_POC16_2nd WD_LRWD1 eIF2A Beta-prop_RIG_1st NBCH_WD40 WDR90_beta-prop_4th Beta-prop_WDR19_1st MIOS_WD40 Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_NUP159_NUP214 Beta-prop_TEP1_C
Other DBs
NCBI-GeneID: 112506849
NCBI-ProteinID: XP_024966917
LinkDB
Position
LG 2:59978960..59984618
AA seq 423 aa
MGKDEDDMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRDEPAGKD
YSVQKLILGTHTSENEPNYLMLAQVQLPLEDAEYDARHYDDDRSDFGGFGCANGKVQIIQ
QINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACSPDMRLRGHNTE
GYGLSWSKFKQGHLLSGSDDAQICLWDINGTPKNKTLDAMQIFKVHDGVVEDVAWHLRHE
YLFGSCGDDQYLHIWDLRSPSVTKPIQSVMAHQSEVNCLAFNPFNEWVLATGSTDKTVKL
FDLRKINTALHTFDCHKEEVFQVGWNPQNETILASCCLGRRLMVWDLSRIDQEQTAEDAE
DGPPELLFIHGGHTSKVSDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDMPAEES
RGA
NT seq 1272 nt   +upstreamnt  +downstreamnt
atggggaaagatgaagacgatatgagaggggagatagaggagaggctcatcaacgaagag
tacaaaatttggaaaaagaacacaccgtttctttacgatttggtcatcacacatgcgctc
gagtggccttcgctcaccgtagaatggcttccggaccgtgatgagcccgccggaaaggac
tactccgtccagaagctgattcttggaacccacacatcagagaatgagcctaattatctt
atgctcgctcaggttcagttgccccttgaagatgctgagtacgatgctcgtcattacgac
gacgatcgctccgattttggagggtttggttgcgccaatggcaaggtacaaataatccag
caaataaatcatgatggagaggtgaacagggctcgttatatgccccaaaaccctttcatt
attgccacaaagacggtcagtgcagaagtctatgtctttgattatagcaaacacccatct
aagcctcctctagatggagcgtgcagtcctgatatgagattacggggccacaacaccgag
ggatatggcctatcatggagcaagttcaagcagggtcatttgttgagcggttctgatgat
gcccaaatttgcttgtgggacattaatggaacccccaaaaacaaaaccctggatgctatg
caaatatttaaggttcatgatggtgttgtagaagatgtagcatggcatttgaggcatgaa
tacttatttggttcttgtggtgatgatcaatacttgcacatatgggatctccggtctcca
tcagttaccaagcctatccaaagtgtaatggctcatcaaagtgaggttaactgcttggca
ttcaatccttttaacgagtgggttttggcaacggggtcaacagacaagactgtgaaattg
tttgatttacgaaaaatcaacactgccctccataccttcgactgtcacaaggaggaggtg
ttccaggttggatggaatccacagaacgagacaatcttagcttcttgttgtcttggtaga
agactcatggtgtgggatcttagcaggattgaccaggaacagacggcggaggatgctgag
gatgggccaccggagttgctgtttatacacggtggtcatacaagtaaagtgtcggatttc
tcatggaatccatgtgaagactgggtggttgcgagcgttgcagaagataacatacttcaa
atatggcagatggctgaaaacatctaccatgatgaagatgatatgcctgcagaggaatcc
agaggtgcttaa

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