Cynara cardunculus var. scolymus (artichoke): 112506852
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Entry
112506852 CDS
T05604
Name
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37e
KO
K03283
heat shock 70kDa protein 1/6/8
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
ccav04141
Protein processing in endoplasmic reticulum
ccav04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112506852
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112506852
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112506852
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccav01009
]
112506852
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112506852
03009 Ribosome biogenesis [BR:
ccav03009
]
112506852
03110 Chaperones and folding catalysts [BR:
ccav03110
]
112506852
04131 Membrane trafficking [BR:
ccav04131
]
112506852
03051 Proteasome [BR:
ccav03051
]
112506852
03029 Mitochondrial biogenesis [BR:
ccav03029
]
112506852
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccav04147
]
112506852
Protein phosphatases and associated proteins [BR:
ccav01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-5
PP5-interacting proteins
112506852
Spliceosome [BR:
ccav03041
]
Complex B
Other components
Prp19 complex
112506852
Complex C
Prp19-CDC5 complex
112506852
Ribosome biogenesis [BR:
ccav03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
112506852
Chaperones and folding catalysts [BR:
ccav03110
]
Heat shock proteins
HSP70 / DNAK
112506852
Membrane trafficking [BR:
ccav04131
]
Endocytosis
Clathrin-mediated endocytosis
Other core components
112506852
Autophagy
Chaperone mediated autophagy (CMA)
Chaperones
112506852
Proteasome [BR:
ccav03051
]
Eukaryotic proteasome
Assembling factors
Other assembling factors
112506852
Mitochondrial biogenesis [BR:
ccav03029
]
Mitochondrial protein import machinery
Endoplasmic reticulum membrane and cytosol
Other ER-memrane and cytosol factors
112506852
Exosome [BR:
ccav04147
]
Exosomal proteins
Proteins found in most exosomes
112506852
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HSP70
MreB_Mbl
FGGY_C
DACNG
Motif
Other DBs
NCBI-GeneID:
112506852
NCBI-ProteinID:
XP_024966921
LinkDB
All DBs
Position
LG 2:complement(6950474..6953416)
Genome browser
AA seq
645 aa
AA seq
DB search
MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKN
QVAMNPTNTVFDAKRLIGRRFSDSSVQSDIKLWPFKVTSGPAEKPMIAVNYKGEEKQFAA
EEISSMVLIKMKEIAEAFLGSTVKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEP
TAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKSTAGDTHLGGEDFD
NRMVNHFVQEFKRKNKKDITGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFY
STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFF
NGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLI
PRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI
TVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKK
KVEAKNALENYAYNMKNTIRDEKIGEKLNPADKKKIEDAIDETMTWLDGNQLGEADEFED
KMKELENVCNPIIAKMYQPGGRGAMNVDDFPPAAAGAAPKIEEVD
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggctggcaaaggtgaaggtccggctatcggaattgatctgggaacaacatattcgtgc
gttggtgtttggcaacatgatcgtgtcgagatcattgccaatgatcaaggtaacaggacg
acgccgtcttacgttgctttcaccgattccgagaggttgatcggtgatgccgccaagaat
caggttgcaatgaaccctaccaacactgtttttgatgcaaaacgtctgattggtaggaga
tttagcgattcttctgtgcaaagcgacataaagttgtggcctttcaaggtcacgtctggt
ccagcagagaaacccatgattgctgttaattacaaaggtgaggagaagcaatttgctgca
gaggagatctcctccatggtgcttattaaaatgaaggaaattgcagaagcttttcttgga
tcaacagtgaaaaatgctgttgtcacagttcctgcctatttcaatgactcccagcgccag
gctacaaaggatgctggtgtgatctctggcctaaatgtcatgcgtattattaacgagcca
actgctgctgcaattgcttatggtcttgacaagaaggctagtagtgttggtgagaagaat
gtgcttatctttgaccttggtggtggtacttttgatgtgtctcttttgactatagaagaa
ggtatctttgaggtgaaatcaacggctggtgacactcaccttggtggagaggatttcgat
aacagaatggtgaaccattttgtgcaggaattcaagaggaagaataagaaggatattacc
ggcaatccaagagcactcaggaggttgagaacctcttgcgagagggcaaagagaacttta
tcgtccacagctcaaaccaccattgagattgactctttgtatgagggtattgatttctac
tccaccattactcgtgctagatttgaggagctgaatatggatctgttcaggaagtgtatg
gagcccgttgagaaatgcttgagggacgcgaagatggacaaaagctcggtccatgatgtt
gttcttgtgggtggatccaccaggatcccgaaagtccagcagttacttcaagattttttc
aacgggaaggagctctgcaagagtataaatcctgatgaggccgttgcttatggtgctgca
gtccaagctgcaattttgagtggcgaaggaaatgaaaaggttcaagatttgcttcttttg
gatgtcaccccactctctctcggacttgaaactgctggaggtgtcatgactgttcttatt
ccaagaaacacgaccatcccaacaaagaaggaacaagtattctcgacatattcagacaac
caacctggcgttttgattcaggtttatgaaggcgagagaacaagaaccagagacaacaat
ttgttggggaagtttgaactctcgggcattcctccagcacctagaggggtcccacaaatt
acggtctgtttcgacattgatgccaatgggatcctaaacgtgtctgcagaagacaaaacc
acagggcagaagaacaagatcacgatcaccaacgacaagggacggctttcgaaggaggaa
attgaaaagatggttcaagaggcagagaagtacaaggcagaggatgaggaacataaaaag
aaggtggaggctaagaatgccttggagaactacgcttataacatgaaaaacaccattagg
gatgagaagattggggagaagctgaacccagcagacaaaaagaagattgaagatgcaatt
gatgaaacgatgacatggctggatggcaaccagcttggtgaagcagatgagtttgaagat
aaaatgaaagaactggagaatgtgtgcaatccgatcattgcgaagatgtatcagcctggt
ggtcgtggagccatgaatgtggatgattttcctcctgctgctgctggcgctgcccctaag
attgaggaggtagattaa
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