Cynara cardunculus var. scolymus (artichoke): 112506877
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Entry
112506877 CDS
T05604
Name
(RefSeq) endoribonuclease Dicer homolog 3a isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccav03036
]
112506877
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
112506877
microRNA pathway
RISC loading complex
112506877
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
ResIII
Helicase_C
PAZ
SWI2_SNF2
dsrm
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
112506877
NCBI-ProteinID:
XP_024966952
LinkDB
All DBs
Position
LG_2
Genome browser
AA seq
1685 aa
AA seq
DB search
MQSSETSSNPTNPLKRRFETMMNDSSNSQESRHSEATIIPQPNLTPREYQLDVFKVAMQR
NTIAHLDTGAGKTMIAVMIIKEVVHSLRKQPSEKKLVIFLAPTRNLVEQQCQVLRENTDL
MVDFYHGSKVGSGENLDGKKVDEWDAAVWEHETNKSHVMVMTPQILLDALRNAFVNFEMI
CLLIIDECHRASGNHPYVSIMKEFYLKSMNKPKVFGMTASPVTKKGVSSAKDCESQITAL
ESVLDSLVYTLRNRTELENAIPSASHIYCFYQPFKVSHSELKAELEFSRLKFEAQLMKMQ
VSLQSSCKDTDEKHELLRKRLSNDHAKIIYCIDELGLLCAYEAVKICIAKAPKAVKEHYS
FQQSQSKCFSFLEEALSIIGKSLPNGHENILDAGCDYENMVTAGHISPKLYQLFQLFRSF
GVSTFREATKVLCLIFVERIITAKVIDIIVKRVGDLSHLEVSYLTGSKTSVDAMSAKLQK
ETLESFRSGKVNLLFATDVVEEGIHVPNCSTVIRFDIPKTVRSNVQSRGRARQSGSQFIL
MLERGNAKQREHVCDIIRSEYSMMDSAKTRDPNTCTVKPYNFKEMETYSVEATGASVTAN
SSVSLIHRYCAKLPGDKYYAPKPKFQFLLVEGSHQCNLTLPPNAALQTITGPLCKTSNLS
KQLVCLEACKRLHQMGALTDHLVLHNEDPSANKSTKSMKEPSSGAGTTKRKELHGTTPIR
ALSGTWGDKHDDSADFYAYKISFTCSIVNVKYSSFVLLTGSKLDDDVGNIEMELYLVSKS
VKCKVSSSVELHLDAEQVAKAKCFQALFFNGIFGKLYIGTKQSGLAREFLLQTDQTLWNP
SYIYLLLPLELLEPLTINWKEVDSCASVVDFVKTNSQFRAKQQSRDGGITTLENIDSVMT
DFDSIDMVHFANESIHKDEVKNVVVLAIHSGKIYSVLELLQDATAESPFDGDTGSNPPRF
SSFSNYYEKKYGIVLAYPKQRLLLLKQSHRAHNLLVDFNGEGILHGKKIRAESCKVNTDR
LRNHVRIPPELLVVVNARLDVVKSFYLLPSLMHRLESLMLASQLRKEVTGHSTDFRISSS
LILEAITTLRCNESFSMERLELLGDSVLKYAVSCDLYLKHSTKHEGQLSSQRSWQVCNST
LYELGINRQLQGYIRDSAFDPTRWTAPGQLPLRLQSCKHGVDTIEVPIHSKYHSKDAQNL
IGKCCDMGHRWMGSKTISDCVEALIGAYYVAGGLTGAICCMKWLSVSCELDESRIDEAVR
IASLHKFAPKLNVIKNLESKLGYEFRVKGLLLEAITHASDQEQGVGYCYQRLEFLGDSVL
DLLITWYLYEKHKDIDPGELTDLRSASVNNENFAYAAVRRNLHPHLQYRSGYLQSQIAEY
EKFVATSSTDTNSLQTKKSPKALGDLVESIAGAILLDTKLNLDEVWRIFEPLLSPIVTPD
KLELPPLRELMELCDSMGYFTKDTCRINGDTVIAELRLQLKDALLTGEGSGATRKIARGQ
AALQLLKELEKRGISRKNQGQENRDGEVDDKNNEKGDTTPSKPDLVRNMKIMLLDPPPPV
DASLANECAMEEQSNSKVEIPVLKSINMNKGGPRTALYELCKKMQWPIPTLTPSEQKSRS
LIEIGEGVEKRTAFNSFESHISLTIPDYGVIELTGDPRADKKSSFDSAALLMLYELQRLQ
KLKIG
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcctcggaaacttcatcgaacccaacaaacccgttgaaaagaaggtttgaaacg
atgatgaatgattcttctaatagccaagaatccagacattcggaagccacgatcattccc
caacctaacttgactcccagagagtatcagttggatgtgtttaaggtggctatgcagcga
aataccatagcacatcttgacaccggagccggaaaaacaatgatagccgtcatgatcatc
aaagaagttgtacattctcttagaaaacaaccatctgaaaagaaattggtgattttcttg
gccccaactcgaaatcttgtcgaacagcaatgtcaggttctcagggaaaacactgatctc
atggttgacttttaccacgggtctaaagtgggatctggtgaaaatcttgatggaaagaag
gttgatgaatgggatgctgccgtgtgggaacacgagacaaacaagagtcatgtaatggtt
atgacacctcaaatcttgttggatgccttgaggaatgcatttgttaattttgaaatgata
tgtttattgataattgacgagtgtcatcgtgctagtggtaatcatccttatgtaagcata
atgaaggaattttacctcaaatccatgaacaagccaaaggtttttggcatgactgcatcc
ccagttactaaaaaaggtgtctcttcggccaaagactgtgaatcacagataacagcgctt
gaaagtgtcttggattctctggtttacacgttacgaaacaggacagagctggagaatgcc
atcccatctgcctcgcatatctattgtttctaccagccattcaaggtttcccattcagaa
ctaaaagccgaactggaattctcaagattgaagtttgaagcacaactgatgaagatgcaa
gtgtcactgcaaagtagttgcaaagataccgacgaaaagcatgagcttctgcgaaagagg
ttatctaatgatcacgctaagattatttattgcattgatgaactgggccttttgtgtgct
tatgaggctgttaaaatttgtatagcgaaagccccaaaagccgttaaagaacattattcc
tttcagcaaagccaatcaaagtgtttttcttttctagaggaagcattatctattattggg
aaatctttgccaaatggccatgaaaatattttagatgctggatgtgattatgaaaatatg
gtaacagctggccatatctcaccgaagctatatcaactctttcaacttttccggtcattt
ggtgtttccactttcagggaagctacaaaagtattgtgcctcatttttgtagagagaatt
ataacagctaaagttattgacataattgtgaagagagttggagacttgtctcatttggaa
gtttcatatttgactggtagtaaaacttcggtcgatgcaatgtcagcaaaactgcaaaaa
gagactcttgaatcttttcggtctgggaaggtgaatctactatttgctacggatgttgtt
gaggaggggattcatgtgccgaattgttcaacagtgatccgtttcgatatccctaaaacg
gttcgtagcaatgtccaatcacgaggacgggctcgtcaaagtggctcccagttcatccta
atgctcgagaggggaaatgcaaagcaaagagaacatgtttgtgacatcattcggagtgag
tattccatgatggacagtgctaaaacgcgagaccctaacacatgcaccgtaaaaccttat
aacttcaaagaaatggaaacgtacagtgtcgaggcaacgggagcttctgtcacggccaat
tctagtgtcagtctcattcatcgatattgtgcaaaactcccaggcgacaagtactacgct
ccgaaaccaaaattccaattcttactggtggaaggttcacaccagtgcaacctgacttta
ccgccgaacgctgctttgcaaacaataactggtcctctgtgtaagacttcaaatctttca
aaacagcttgtttgcttggaggcctgcaaaaggttgcaccaaatgggagcgctcaccgac
catctagtccttcacaatgaagatccttcagcgaacaaatctactaaaagtatgaaagaa
ccatcttctggtgcagggactacaaagaggaaggagttacatgggaccacccccattcgt
gctttgtcgggtacttggggcgacaaacacgatgacagtgctgatttttatgcttataaa
atcagtttcacatgtagcattgtcaatgtgaagtattcaagtttcgttcttttgaccgga
tcgaagctcgatgatgatgtgggaaatatcgagatggagttgtacttggtctcgaagtct
gtaaaatgcaaggtttcttcatctgtggaattgcatctcgatgcagaacaggtagcaaaa
gcaaagtgcttccaagcgttattcttcaatgggatatttgggaaattgtatatcggcaca
aaacaatcaggattggcaagagaattcttgcttcaaactgaccaaacactctggaaccca
tcatacatttacttgctcttgcctctggagttgttagaacccttgacgatcaattggaag
gaggttgactcttgtgcatctgtggttgactttgtgaagacaaattcccagttcagggcc
aagcagcagtcccgtgatggcggaattacaacactagagaacatagattcagttatgacc
gattttgatagcatcgatatggttcacttcgcaaacgaatctattcataaagatgaggtc
aaaaatgtcgtagttttggccattcactctgggaagatctattctgttcttgagcttctt
caagatgcaactgctgaaagtccttttgatggagatactggctcgaatcctccaagattt
tcatcgttcagcaactattacgagaagaaatatggaattgttctagcctacccaaaacaa
cgattgttgctgctaaaacaaagccatagggcacataatcttcttgtggacttcaatggt
gaaggcattttacatggaaagaaaatacgggccgagagctgtaaggtgaatactgacagg
ctgagaaatcatgtccgtataccaccagaacttctagtcgtcgtcaatgcaaggctggat
gttgtgaaatcgttctatttgctgccatcattaatgcaccgactcgagtcattaatgttg
gctagccagcttcgtaaagaggttactggccattctactgactttcgcatctcaagctca
ttgattttggaagccatcaccactctcagatgcaacgagagtttctctatggaacgattg
gagttgctcggtgattcagtgctaaaatatgcagtgagctgtgatctctatcttaaacac
tcgacaaaacatgaagggcagctttcttctcagcggtcatggcaagtttgtaactcgacc
ttgtacgagttgggaatcaaccgtcaattacagggttacataagagatagtgcatttgat
cctactaggtggactgcgccaggccagcttccattacggcttcaatcttgtaaacatggt
gttgatacgatagaagtgcctatccacagcaaataccattccaaagatgcacaaaatttg
atcgggaagtgttgtgatatgggccaccgatggatgggctcaaagacgatctccgactgt
gttgaggctctaattggagcttattatgttgccggtgggttgaccggtgctatttgctgt
atgaaatggctcagtgtaagttgcgagcttgatgaatcacgcatcgatgaagccgttcga
attgcttcactccacaagttcgctccaaaactgaacgtcatcaagaatttagagtcgaag
cttgggtatgaatttcgggttaagggtttgttgttggaagctatcacacatgcatctgat
caagagcaaggagttggatactgttatcagaggttagagtttcttggtgactcggtattg
gacctacttattacttggtatctttacgagaagcacaaggatattgatcctggagaattg
acggacttacggtcagcctctgttaataacgaaaattttgcttatgctgctgtgagacgg
aatcttcatccccacctccagtatcgctctggttatctccaaagtcagattgctgagtat
gagaagtttgtagctacctcttccaccgatacgaactccctccaaaccaagaaaagcccg
aaggcactgggcgacctagttgagagtatcgcaggtgccatattgcttgatactaaactc
aatcttgatgaagtttggagaatctttgagccattactatctccaatagtaacacccgat
aaacttgagcttcctcctttacgtgaattgatggaattatgcgactcgatgggttatttc
accaaagacacatgtagaatcaacggtgatactgtaatagctgagctacgattgcaactc
aaagatgccttattgactggtgagggcagcggtgcaaccaggaaaattgcaaggggtcaa
gccgctcttcagttgttaaaagagctcgagaaaagaggaatttcgaggaagaaccaaggt
caagaaaatagagatggggaagtagatgataaaaacaatgaaaaaggtgacacgaccccg
tcgaagccggatcttgtcaggaatatgaagataatgctcttagatcctccgccacctgta
gatgcctcccttgctaatgaatgtgcaatggaggaacaatccaattctaaggttgaaatc
ccagtcctaaagtcgatcaatatgaacaagggaggaccaagaaccgctctttatgagctg
tgcaaaaaaatgcaatggccgatccctactttaacgccttcagagcagaaatcaagatct
ctgattgaaattggcgaaggggtcgagaaaagaacagcgtttaatagctttgagtctcat
ataagcttgacgattcctgattatggagttattgaactcaccggagatccacgagcagat
aagaagagttcattcgactcggctgctctactcatgctctatgagctccagcgactccaa
aagctcaagatcggctag
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