Cynara cardunculus var. scolymus (artichoke): 112506930
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Entry
112506930 CDS
T05604
Name
(RefSeq) lysine-specific histone demethylase 1 homolog 3
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Amino_oxidase
NAD_binding_8
SWIRM
Pyr_redox_2
DAO
Thi4
HI0933_like
FAD_oxidored
FAD_binding_2
FAD_binding_3
Pyr_redox_3
Pyr_redox
Lycopene_cycl
MurD-like_N
GIDA
AlaDh_PNT_C
NAD_binding_9
NAD_binding_7
SCAF11-like_C
Glu_dehyd_C
Shikimate_DH
Med26
YjeF_N
Motif
Other DBs
NCBI-GeneID:
112506930
NCBI-ProteinID:
XP_024967035
LinkDB
All DBs
Position
LG 2:2447118..2456846
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AA seq
1932 aa
AA seq
DB search
MECDGKEPRSNQELLQIGLDKEIGLGFDVSSAVRKTRVEKMDVEKLGKKKRSAEIKSGLD
SDDDEPIGSMFNIKSRRNPKKVKVESDGGVDKVKKVEDDGSQDQELGGMDDTLASFRKKL
KGPKESRVRATKGGDLDTNLKESVSRSSIGAVKDVDLTENLVSKNVAKGQIKSEDGIVES
VKKGSKSSGKEKSKRSKSKSVRKKALGITKFDDVLDGQRSGENSTQNDKEGGVELEGDLD
PCLDDHLEDSLSVFLRKAQSGSLQKARSSKLKQVKTTQARNDGVAPSSNYCQDGIEKHQK
SNDQVHESYTVPVLTAEKSPHDGSTQRILEDKVPVTLPETSASCSKYPGKSQRLEEDERL
TDHPNKDPTGNNGFQEDSNHSFSPIAKLAHDLSEIEVHEKKLEPACPIPESVPIGGFIDS
LEEQSKVVLKGPISTTDQKISLFPSPSSLGHNENLNDDLKPAGAVVLDQLQNGSHSTQPH
SLSSAFQLPQKEVTSSDCDSPNQIQGTCTEDPDVVSVSSQKENASASNGRLSPVSLGECN
KYADEETPSIATDQNEAYASDTGSMPDPETKGNKQSAGKRIVRQAKRYRHEDMAYEGDAD
WEILIHGQNFLVNHQDGDKALSFKTRGKSDFLQTIAMEAESGGVAAVSVGLKARAAGRVE
KIKFKELLKRKGGLQEYIECRNHILHLWNKDVTRILPLSECGISDTAVVNEHPQASMVRD
IYSFLDQYGYINFGVASKKEMSDAGVKPNFRLSGEENDGRKSGAPVTDLDDGVSFILGRT
KNYHALTDEKGDTLLNNENEAATESLDGIVKKDKGAPISSMEMECQEHSPCECVEKDCHG
GKLPNNLLSSTYTEAEDGQSASVDQKEPTVCMQCASETRKKIIVIGAGPAGLTAARHLQR
QGFHVTVLEARDRIGGRVFTDRLSLSVPVDLGASIITGVEADVTSQRRPDPSSLICAQLG
LELTVLNSDCPLYDTVTGKKVPPDLDEALEAEYNSLLDDMQLVVAQKGDHAIRMSLEEGL
EYGLKMRRNCIEHAVHKSDMVMGSEKSSTKEEILSPLERRVMDWHLAHLEYGCAASLQEV
SLPHWNQDDIYGGFGGAHCMIKGGYGAIVDSLRDGLHIHLNHMVTDVCYQAENHGKDESQ
KRVKVSTENGKDFTGDAVLITVPLGCLKAETIKFSPSLPQWKYSSIQRLGFGVLNKVVLE
FSEVFWDDSVDYFGATAEETDQRGWCFMFWNVKKTVNAPVLIALVVGKAAINGQDLSPSD
HVKHALVVLRKLFGEAAVRDPVASVVTDWGRDPFSYGAYSYVAVGASGEDYDTLGRPINN
CLFFAGEATCKEHPDTVGGAMMSGLREAVRIVDILTTGNDFTAEVEAMAAAKRHSDSERN
EVRDIVRRLDAIELTSVHKSSLDGSHIATKEGLLQNMFSNAKSTAGRLHLAKELLNLPSD
ILKSFAGTKEGLSILNSWILDSMGKNGTQLLRHCVRLLVLVSTDLLAVRLSGIGKTVKEK
VCVHTSRDIRAIASQLVSVWVEIFRKEKASNGGLKLLRQSSAADASKSKSHLASGKPPLR
AHHTSSDNRVVKGAGNPLSANANNRKGNSAAATKPENKPSSSQGSAGRQNCKEEDNKDIP
MSEEEQAAFDAAEAARAAAIAAAEAYASSGAKCNTTLQLPKIPSFHKFARREQYAQIDDT
EFRRKWAGGVIGRQDCVSEIDSRNCRVRDWSVDFSGAGVNIESSKMSVDNRSQRSNSNEN
ACQLSYREHSGESAGVDSNIFTKAWVDSAGSEGIKDHNAIERWQSQAAAADSDFFHRSMH
VMDEEDSNMNLKPSIRRHDGLANESSASQVTVNRELVGNQPRGVDNIKQAVVDYVASLLM
PLYKARKIDKEGYKSIMKKTATKVMEQTTDAEKAMAVFEFLDFKRKNKIRAFVDKLIERH
MAMKTDAKSGCS
NT seq
5799 nt
NT seq
+upstream
nt +downstream
nt
atggaatgtgatggtaaggaacccagatcaaatcaagagttgttgcaaattgggctagac
aaggaaattgggttagggtttgatgtaagttctgctgttaggaaaactagggttgagaag
atggatgtggagaaattggggaaaaagaaaagatctgctgaaattaaaagtgggttagat
tcagatgatgatgagccgataggctcgatgtttaatattaaaagtagaaggaaccctaag
aaggttaaggtggaaagtgatggtggtgtagacaaggttaagaaggtggaagatgatggg
tctcaagatcaggaattgggtggtatggatgacacattggctagttttaggaagaaattg
aagggcccaaaggagtctagggttcgtgcaacaaaagggggggatttggataccaatttg
aaggagtcagtcagtcgatcttcaattggggctgtgaaagatgtagatttgactgaaaat
ttggtgtcaaagaacgtggctaaaggacagatcaaatctgaggatggaattgttgagagt
gtcaagaaagggtcaaaaagcagtggtaaagagaaaagcaagagatccaagagtaaatcg
gtgaggaagaaggctttgggtatcaccaagtttgatgatgttttagatggtcagagatct
ggtgagaattcaacacaaaacgataaagagggtggtgtggagcttgaaggagatcttgac
ccctgtttggacgatcatttagaagattcattatcagtttttctccgcaaggcacaatct
ggttcgcttcagaaagctcgcagctcaaaacttaagcaggttaagacgactcaagctcgt
aatgatggagtggcgcccagttcaaactactgtcaggatgggattgagaaacatcagaag
tcaaatgatcaagtgcatgagtcgtatactgttccagttttaacagctgagaaatcgcca
catgatggatctacccagaggatcctagaggataaggttcctgttacattacctgaaaca
tctgcatcctgttcaaagtatcctggcaagagtcaaagactagaagaagatgaaagatta
acagaccaccctaataaagatcctacaggaaataatggttttcaggaagattcaaatcat
tccttctccccgatagcaaagttagctcatgatctttctgagattgaagttcatgaaaaa
aagttggagcctgcctgtcctatccctgagagtgttccaatcggaggattcattgacagt
ttggaagaacagtcgaaagttgttttaaagggccccatatcaaccacagaccagaagata
tcactattcccttctccaagctcgttaggtcataatgagaacttgaatgatgatttgaag
cctgctggtgcggttgttttggaccagttgcagaacggttcgcatagtactcaaccccac
tcattgtcttctgctttccagctaccacaaaaggaagtcacttccagtgactgtgatagt
ccgaaccagattcagggtacttgcacagaagaccccgacgttgtttcagtttcttcacag
aaggagaatgcatcagcatcaaacggtaggttatctccagtgtcgttaggtgaatgcaat
aaatatgcagatgaggagactccatcaatagccacagatcaaaatgaagcttatgcaagc
gacactggatctatgcctgatcctgaaacaaaaggcaataagcaatcagctggcaagcgt
atcgtcagacaagctaagaggtataggcatgaggatatggcttatgagggagatgctgat
tgggagatactgattcatggacaaaatttccttgtgaaccatcaagatggagacaaggca
ctgtcatttaaaacaaggggaaaatcagatttcttgcaaacaattgccatggaggcagaa
agtggaggggtagcagctgtttcggttggactgaaagcacgcgctgctggtcgtgttgag
aagattaagttcaaggaattactgaagcgtaaaggcgggcttcaagaatatatagagtgc
aggaatcatattctacatctttggaataaggatgtaactcgcatattgcctctgtcggaa
tgtggaatatctgatactgctgtcgtgaatgaacatccacaggcttctatggttagggat
atttactcatttctggatcaatatggttacataaacttcggagttgcttctaaaaaggag
atgtctgatgctggtgtgaagcccaatttcaggctttcaggagaggagaatgatggaaga
aaatctggagcccctgttaccgatttggatgatggagtttcctttatccttggtaggact
aaaaattaccatgccttgacagatgagaagggtgacactttacttaacaatgaaaatgaa
gcagcaacagaaagtttggacgggatcgttaaaaaagataaaggtgctcccatttcctcc
atggagatggaatgtcaagagcattcaccttgtgaatgcgtagaaaaggattgtcatggt
ggaaaactacccaacaatcttctgagctcaacttatactgaagcagaggatggccaatct
gcttcggttgatcaaaaggagccaactgtctgtatgcagtgtgcttcagaaacaagaaag
aaaatcattgtaattggagctggtcctgctggattaactgctgctcgacatttgcagcgt
cagggtttccatgttacggtgctagaggccagggatagaattggtggtcgtgtttttaca
gatcgtttgtccctttcagtgcccgtagatcttggggctagcattatcacaggtgttgag
gctgatgtcacttctcaaagaagaccagatccttcttcattgatttgtgcacagttgggt
cttgaactgactgttttgaacagtgactgtcctctctatgataccgtcacaggtaagaaa
gttcctccggatttggatgaagctttggaggctgaatacaatagcctacttgatgacatg
caattggttgttgcccaaaagggagatcatgcaatacgaatgtcccttgaggagggttta
gaatatggacttaagatgcggcggaattgtatagagcatgcggtacataaatcagatatg
gtaatgggatctgagaaaagtagtaccaaagaggagatcttgagtcctcttgaaaggaga
gtcatggattggcatcttgctcatttggaatatggttgtgctgcttcactacaagaagta
tctcttccgcattggaatcaagatgacatttacggaggatttggcggagctcactgcatg
atcaaagggggttatggtgctattgttgattctcttagagatggacttcatatccacctg
aaccatatggttactgatgtttgctatcaagcagaaaatcatggaaaagatgagtcacag
aagagagttaaagtttctacagaaaatggcaaggatttcacaggagatgcagttttgatc
acagtgccacttggatgtctaaaagcagaaaccataaagttttctccatcattaccccag
tggaaatattcttccattcaacgacttggttttggtgtgcttaacaaagttgttttggag
ttctctgaagttttttgggatgattctgttgattactttggagccacagcagaggaaact
gatcaaaggggttggtgctttatgttttggaatgtcaagaaaacagttaatgcacctgtt
cttatagcattggtggtcggcaaggcagcaataaatggccaagacttaagcccgtctgat
catgtaaagcatgctttagttgtacttcggaaactttttggggaggctgctgtacgtgat
ccagttgcatctgtagtgacagactggggaagggatccatttagctatggtgcttactca
tatgttgctgttggggcatctggagaagactatgatacattggggcggcctattaacaac
tgtttattctttgctggtgaagctacatgcaaggagcatccggacaccgttggaggggca
atgatgagtgggctacgggaagcggtgcgtatagttgacatactaaccacaggaaatgat
tttacagcagaagtagaagccatggctgctgcaaaaaggcattctgacagtgaaaggaat
gaagttagggacattgttaggagacttgatgctattgagctcacaagtgttcataagagc
tctttggatgggtcccacattgcgacaaaggagggtttactacagaatatgttctccaac
gcaaagagtacagctgggcgcttgcatcttgctaaagagctcttgaatcttccttctgac
attcttaaatcttttgctggaaccaaagaagggcttagcattctcaactcatggatactg
gattcaatggggaagaatgggactcaactgttgcgtcattgtgttcgtcttcttgtactt
gtatctacagatctactagcagttcgcctttcaggtattgggaaaactgtaaaagagaag
gtttgtgtgcataccagccgagatatccgtgctatagcgagccaacttgttagcgtatgg
gttgagatttttcgaaaggagaaggcatctaatggtgggctgaagttactgagacaatca
agtgctgcagatgcttccaaaagcaaatctcatttagcttctgggaaacccccattgcgt
gcccatcatacttcatctgataacagagttgtgaagggtgctggcaaccctttatctgca
aatgcaaacaatcgaaaagggaattctgcagctgcaacaaagccggaaaacaaaccgtct
agttctcaaggttctgcaggaagacaaaattgtaaagaggaggataacaaagatataccc
atgtctgaagaggaacaagctgcttttgatgctgcagaagcagcccgtgctgctgctatt
gcagctgccgaggcgtatgcatcatctggtgccaagtgcaacacaaccttgcagcttccg
aagataccatcttttcataaattcgccagaagggagcaatatgcacaaatcgatgatact
gaattccgaaggaagtgggctggtggcgttatagggaggcaagattgcgtatctgaaata
gattctagaaactgtagagtgagggattggtcagttgacttttctggtgccggagtcaat
attgagagttcgaaaatgtccgtagataaccgctcacagcggagcaactcgaatgaaaat
gcatgtcagttgagttacagagagcactcaggtgaaagtgctggtgttgatagcaacata
tttacaaaagcatgggtcgatagtgccggtagtgaagggataaaagaccataatgccatt
gaacgatggcaatctcaagcagctgctgctgattctgatttctttcataggagtatgcac
gtaatggacgaagaggactcaaacatgaatctgaaaccatcgattcgtaggcatgacggc
ctggcaaatgagagctctgcttcacaagttaccgtgaacagggagttggtgggtaatcaa
cctcgaggagtagacaacatcaaacaagctgttgttgattatgtggcatcgcttcttatg
cctctttacaaagcaagaaaaattgacaaagaaggttataagtcgataatgaagaaaaca
gccacaaaggtcatggagcagaccacggatgcagagaaagcaatggctgtatttgagttt
cttgattttaagcgcaaaaacaagatacgagcatttgtggacaagttaattgagaggcat
atggctatgaagacagatgccaaatctggatgttcctga
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integrated database retrieval system
