Cynara cardunculus var. scolymus (artichoke): 112507214
Help
Entry
112507214 CDS
T05604
Name
(RefSeq) protein PAT1 homolog isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112507214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112507214
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112507214
mRNA degradation factors
5'-3' decay
Decapping complex
112507214
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
112507214
NCBI-ProteinID:
XP_024967450
LinkDB
All DBs
Position
LG_2
Genome browser
AA seq
864 aa
AA seq
DB search
MERLGGGGDTQQLVDPRDHNQQLGSNSAGGTVFDASQYAFFGNEVLEEVELGGLEDEEED
LPAAKFEDEEYQLEQDECFMLQGVFPGIDDLATTFSKLNKDVMGTSVGVFGDQGSRENSS
AAEWAQGGEYTNWFDQDIFDAESAQDSNRWSNPSFPLQDASMLIHRTSSYPEKHQQQNLN
QQLNDESKLYLHRTSSYPEQHQQQNLNQRLLDESKHLHRTSSYPEQQQPHHLSQHLHFSS
EPVPVPKSSFVSYPPPGGPGGSPQPPASHQLHHLNAQFHGSGHQMPPSFSNISPLSNPQL
QMGGMPHGSQFGGNLPQFRPLAPSVNNRMPNQWTGQNSLYPGDQPDLSNGMLQQQLAHKN
GLLPPQQHRLHHQFQPSFGHLSGLQPQLPQLMNHHLSPSPPLMNNFEVFGMAGPRDPRPK
PMPKGRPGQRYPQSGFDTSGWPQFKSKYMTADEIENILRMQLAATHSNDPYVDDYYHQAC
LANKSSGAKLRHHFCPTQLRDCPPRARAANEPHAFLQVDALGRVSFSSIRRPRPLLEVDP
PKSSASGNTDQKMLDKPLEQEPMLAARVTIEDGICLLLDVDDIDRFLQFNQLQDGGAQLR
QRRQVLLEGLATSLQLVDLLGKNGQTVELTPKDDLVFLRLVSLPKGRKLLSRYLQHLSPG
SELTRIVCMAVFRHLRFLFGGLSSDPGAAATANNLATNVSSSIRGMELRALAACLASVVC
STEHPPLRPVGSPAGDGASVVIKSVLERGTELLTDPHAVSNCSMPNRAFWQASFDAFFGL
LTKYCFSKYDTVVQSLLTQGGGPTDMAVIGSDAAKAISREMPVELLRASLPHTNENQRKL
LLDFAQRSMPVLGMNSSGAGNGGT
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggaaagattgggaggtggaggtgatactcaacaactcgttgatcctcgagatcataat
caacaacttggttcgaattcagcaggtggtactgtatttgatgcatcgcagtatgcattc
tttggaaatgaagttcttgaagaagttgagttgggaggtctggaagatgaagaggaagac
cttccagctgccaaatttgaggatgaagagtaccaattggagcaagatgagtgttttatg
ttgcagggtgtgtttccaggaatcgatgatcttgccaccacattttcaaagctcaacaaa
gatgtcatggggacaagtgttggagtttttggtgaccaaggatcaagagaaaattcatct
gcagctgaatgggcacagggaggagaatacaccaactggttcgatcaggatatttttgat
gcagaaagtgctcaggatagcaatagatggtcaaatccttcatttcctcttcaagatgca
tcaatgcttattcatagaacatcttcctaccctgagaaacatcaacaacagaatcttaac
cagcagctgaatgatgaatcaaagctataccttcacagaacatcatcttatcccgagcag
catcaacaacagaaccttaaccagcgcctgctagatgaatcaaagcatctccacagaaca
tcatcttaccctgagcagcagcaaccgcaccaccttagtcagcatttgcatttctctagt
gagccggttccggttcccaaatcttctttcgtttcataccctccacctggcggtccaggt
gggtctcctcaacctccagcaagccatcaattacatcatcttaatgctcagtttcatggc
agtggccaccagatgccgccatctttctccaatatatctccattgtcaaatccgcagctt
cagatgggtgggatgcctcatggatcgcaattcggtgggaatcttccccagtttcgtcct
cttgctccatctgttaataaccggatgcctaaccagtggacgggtcagaatagtttatat
ccaggagaccaacctgatctttcaaatggtatgttgcaacaacagcttgctcataagaac
ggtttgctgccaccacagcaacatcggttgcatcaccaatttcagccatcttttggccat
ttatctgggttgcagccccaattgccccaactaatgaatcaccatctctctccatcccca
ccactgatgaacaattttgaagtttttgggatggctggtccaagggatccaaggcctaaa
ccaatgcccaaaggtagaccaggtcagagatatccccaatcggggtttgacaccagtgga
tggccacagttcaaatcaaagtacatgacggctgatgagatcgaaaatattctcagaatg
cagcttgctgctacacacagtaacgatccttatgtcgatgattactatcaccaagcttgc
ctggctaacaaatctagcggtgcgaagttgagacaccatttctgcccaacccagttgagg
gattgtcctcccagagctcgtgctgctaacgagccacatgcttttcttcaggttgatgct
ttgggaagggtttctttttcttcgatacgtcgacctcgcccacttcttgaggtcgatcct
ccaaagtcgtctgctagcggcaacactgatcagaaaatgttggataaaccattggaacaa
gagcccatgcttgcagctagagtcaccattgaggacggcatttgtcttcttctggatgtc
gatgatattgatcgctttcttcagttcaatcagctccaagatggtggagcccaattacgt
caaaggcgacaagttttactcgaaggattagcaacatcgcttcagcttgttgatctgcta
ggcaaaaatggtcaaacagtagagttgactcccaaagatgatcttgttttcttacggtta
gtttctctcccaaagggtcgaaaacttctctcaaggtacctccaacatctctcccctgga
agtgagctaacccgcatagtttgcatggcggtttttcgccatttaagattcttgttcgga
ggtctttcctcagatcctggagcagcagcaaccgctaacaatcttgcaacgaatgtttca
tcttctattcgtgggatggaacttcgagctcttgccgcctgtctagcatccgttgtttgt
tccacggagcatcctccacttcgtcctgttggaagtcctgcaggcgatggggcttctgtt
gttataaaatccgtactagaaagaggaaccgaactcttaacagacccacacgccgtcagt
aactgcagcatgcctaatcgggcgttttggcaggcctcttttgatgctttttttggactt
ctgaccaaatactgttttagtaaatatgatactgttgtccaatcgttgctgacacaggga
ggcggtccaaccgatatggctgttattgggtcggatgctgcaaaagccattagccgggaa
atgcccgttgaactcttgcgtgctagccttcctcatacgaatgaaaaccagaggaaactg
cttctggattttgctcaacgatcgatgcctgtgctcggaatgaatagcagtggggcagga
aacggtggcacttga
DBGET
integrated database retrieval system
