Cynara cardunculus var. scolymus (artichoke): 112507224
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Entry
112507224 CDS
T05604
Name
(RefSeq) protein STABILIZED1
KO
K12855
pre-mRNA-processing factor 6
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112507224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112507224
Spliceosome [BR:
ccav03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112507224
Complex C
U5 SnRNP specific factors
112507224
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
HAT_PRP39_N
TPR_19
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
TPR_17
TPR_8
TPR_2
TPR_CcmH_CycH
ARM_TT21_C
TPR_1
CREPT
PMC2NT
EAD1
Motif
Other DBs
NCBI-GeneID:
112507224
NCBI-ProteinID:
XP_024967467
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All DBs
Position
LG 2:68803508..68808491
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AA seq
943 aa
AA seq
DB search
MQAPVAPKNRLEFLNTRPPPNYVAGLGRGATGFTTRSDIGPARAAPDLPDRSAAAVGAAG
PSGVGRGRGKGPGEEEEEEEAEDKGYDENQKFDEFEGNDVGLFASAEYDEEDKEADAVWD
EIDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFADLKRKLVTLSAEEWDSIPEIGDY
SLRNKKKRFESYVPVPDTLLEKARQEKEHVTALDPKSRAVGGTETPWSQTPDLTAVGEGR
GTVLSLKLDRLSDSVSGLTVVDPKGYLTDLKSMKITSDAEISDIKKARLLLKSVIQTNPK
HPPGWIAAARLEEVAGKIQTARELIKRGCEECPKNEDVWIEACRLANPDEAKAVIARGVK
AIPNSVKLWMQAAKLENDDASKSRVLRKGLENIPDSVRLWKAVVELANEEDAKLLLQRAV
ECCPLHVELWLALARLETYDAAKKVLNKAREKLPKEPAIWITAAKLEEANGNTAMVGKII
ERGIRALQREGLEIDREAWMKEAEAAERAGSVATCNAIISNTIGIGVEEEDRKTTWVADA
EECKKRGSIETARAIYGHALTVFLTKKSVWLKAAQLEKAHGTRESLDALLRKAVTYRPQA
EVLWLMGAKEKWLAGDVPSARAILQEAYAAIPNSEEIWLAAFKLEFENNEPERARMLLAK
ARERGGTERVWMKSAIVERELGNAEEERRLLDEGLKLFPSFFKLWLMLGQLEERLGRLPQ
AKEAYELGLKQCQNSSPLWLSLANLEERMTGLSKVRAVLTMARKRNPHNPELWLAAVRAE
SRHGSKKEADILMAKALQECPNSGILWAASIEMAPRPQRKTKSSDAYKKCEHDPHVIAAI
GKLFWHDRKVDKARTWLNRAVTLAPDVGDFWALLYKFELQHGTEDQQKEVLRKCVAAEPK
HGEKWQPISKAVENSHQPVEAILKKLVVALGKEEKAAEENKHQ
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcccctgttgcacccaagaaccgattggagtttctcaacaccagacctccacct
aattatgtagctgggctaggtcgaggtgccactgggttcaccactcgttctgatattgga
cctgcccgtgccgcccctgacctccctgacaggtctgcagctgcagttggtgctgcaggt
ccttctggtgttgggcgcggccgtgggaagggtcctggtgaggaggaagaagaggaggag
gctgaagataagggatatgatgagaaccagaagtttgatgagtttgagggtaatgatgtt
gggctatttgcctctgctgagtatgatgaggaagataaagaggctgatgctgtgtgggat
gagatcgataagaggatggattctaggaggaaagataggagagaggctaggttgaaggag
gaaatcgaaaagtatagagcttctaaccccaagattactgaacagtttgctgatcttaag
aggaagttagtgacactctctgctgaagaatgggacagtattcccgaaatcggagattat
tctttgaggaataaaaagaagagattcgagagttatgtgccggttcccgatacgctactt
gagaaagctagacaagaaaaagaacacgtcactgcattggatccaaagagtagagctgtg
ggtggaacggagacgccttggtctcaaacaccagatttgactgccgttggtgagggtaga
ggaacggttttgtctttgaaattggataggctttcagattctgtttcgggtttaactgtt
gtcgatccaaaagggtatttgactgatctgaagagtatgaagatcaccagtgatgctgag
atatcagatatcaagaaagctaggttgttgctgaagtcggtcattcagacaaatccaaaa
catccacctggttggattgcagctgcaagattagaggaagtcgcgggcaagattcagaca
gcgagggaattgatcaagagaggctgcgaggaatgtccaaagaacgaggatgtgtggatc
gaggcatgtcgattagcaaatccagatgaagccaaggctgtgatagcgagaggggttaaa
gcaattcccaattccgttaagctttggatgcaagctgcaaaattggaaaacgatgacgcc
agtaaaagtcgggtattgaggaagggtcttgaaaacattcctgactccgtaaggctatgg
aaagcagttgtggaacttgctaatgaagaagatgcaaagcttttgcttcagagggccgtg
gagtgttgcccattacatgtcgaattgtggcttgcgttggctaggttggaaacgtatgat
gcagcgaagaaggtgctgaataaagcaagagagaagctccctaaagaaccagccatttgg
atcaccgctgcaaaattggaagaagctaacgggaacaccgccatggttgggaagataata
gaaaggggtatacgggctttgcagagagaagggctcgagatcgacagggaggcttggatg
aaagaggctgaagctgctgaacgagctggttctgtggcaacctgtaatgcaattattagt
aacaccattgggatcggagtggaagaagaagatcgtaagacaacttgggttgccgacgca
gaagaatgcaagaaaagaggttccattgaaacagctagagcaatttacggtcacgcactt
accgtgttcttaacaaagaagagcgtatggcttaaagcagcacaacttgagaaggctcat
ggcactcgggagtctctcgatgctctacttcgtaaagccgttacctacagaccgcaggcc
gaggtcttatggctaatgggtgctaaagaaaagtggcttgctggcgatgttccttcagct
cgggcaattcttcaggaagcatatgctgcgattcccaattccgaagagatctggcttgca
gcgtttaagcttgaatttgaaaacaacgagcctgaaagagcgagaatgcttctcgctaaa
gcccgtgaaaggggaggaaccgagagagtgtggatgaagtctgccattgtcgagagagag
cttgggaacgccgaagaagaaagaaggctgctcgatgaaggattgaaactattcccttcg
tttttcaagttatggttgatgctcggtcaactcgaggaacggctcggtcgcctgccgcaa
gcaaaggaggcatacgagttgggtttgaaacagtgtcaaaactcaagccctctttggctc
tcactcgcaaatctcgaggagagaatgaccggactgagtaaagttcgagctgttctgaca
atggctaggaagaggaacccacataaccctgaactatggttagccgccgtacgagccgag
tcaagacacggttctaagaaagaagccgacattttaatggcgaaggcgttgcaggaatgc
ccgaacagcggtattctgtgggctgcttcgattgagatggctcctagaccacaacggaaa
accaagagctcggacgcttacaagaaatgcgagcacgatccccatgtaatcgccgctatc
ggaaagctgttttggcacgatcggaaggtggacaaagcacgaacttggctcaaccgagcg
gttactcttgcaccagatgttggagacttttgggctttgctttataaatttgaactacaa
catggaaccgaggatcagcagaaggaagttttgaggaaatgtgttgctgcggaaccgaaa
cacggtgagaaatggcagccgatatcgaaggcggtcgagaattcgcaccaaccggtagaa
gcgattttgaagaaattagtagttgcgcttggcaaggaggagaaagccgcggaagagaac
aaacatcagtga
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