Cynara cardunculus var. scolymus (artichoke): 112507253
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Entry
112507253 CDS
T05604
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112507253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112507253
Enzymes [BR:
ccav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
112507253
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112507253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
112507253
NCBI-ProteinID:
XP_024967507
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All DBs
Position
LG 2:complement(14875229..14879881)
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AA seq
621 aa
AA seq
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MPPFPMLRRRFLCTQTSNLSLFNQKPVGRQWPIKQVTKSNFSDSLHELKNKISDSDFVAV
SLQNTGSYSSPWHRLLPFDTAEIAYLKAKYAAERFQILQFSVCPFSVRASNKLTAYPFNF
HLFPRDEHKIGMPCYSFSCQPSYLTSMAQEDFDFNVCIYDGISYLSRAQESAAKGQMENP
VSSGYVAQSPSSRSVADNVFVERIKSRVGHWISACKHSDTRTNDVLVNSLRKLILGGEDY
GLRPSLNIDVCSERQVQLVFEMVKSGYENVVPLIIPAKGGGAQAVRVVLTSSKEDRDLLE
KELQNMEEEQSKRVRGFREVIDLISTSRKPVVAHKSLNDFTFIHSKFLAPLPSTMDEFRS
SLHSVFPNILDVNHLMKEIGPLNKYTNVPAAISYLKRNFFAPIEIEIPQKASVEESKNHG
HNVVRISELFAKLCFILKIAPETETHNPDGPSTLKCYSNVLNLGSNSFQDSNEDDDISAW
THNPTKISINNLLFLWGFRSGTSARRLKNLLCKSHEKLSEDVFDVRLVDKNCAVVVFWKT
GLSEWFLTTIDSGDGELRELAAEGLMAVGYEAYKRVCKSEILGADLADSLAEFDREASEA
HTEESAEVYWNNELMINLDDL
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgccgccatttccgatgttgcggaggcgcttcctctgcactcagacatctaacttatcc
ttgttcaaccaaaaacccgtcggtcgacaatggcctataaaacaggttacaaagtccaat
ttctcagattcactccatgaattgaaaaacaaaatatccgattccgatttcgtggcggtt
tctttgcagaacaccggttcttactcctccccgtggcatcgacttctgccctttgacact
gctgaaatcgcatacctgaaggccaagtatgccgccgagaggtttcagattcttcagttc
tctgtttgccctttctccgttagggcttctaataagcttacagcttacccgttcaacttc
catttgttccctagggatgagcataaaatagggatgccgtgttacagtttttcatgtcaa
ccatcctatttaacttctatggctcaagaagattttgacttcaatgtctgtatatatgat
ggtatatcatacttgtccagagcacaagaatcagcagcaaaaggtcaaatggaaaatcca
gtttcaagtggttacgtggcacaatctccatcctctcgttcagttgcagataatgtattt
gttgaaaggattaaatccagagttgggcactggataagtgcttgtaaacattcagacacg
agaactaatgatgttctagttaattcccttaggaaacttatattaggaggtgaagattat
ggattgagaccatctctgaacatagatgtttgcagtgaacgtcaagtgcagcttgtattt
gagatggtgaagtccggatatgaaaatgttgtgcctttgataatcccagcaaaaggaggc
ggagcccaagctgtccgagttgttttaacaagttcaaaagaagatagagatctgttagag
aaagagcttcaaaatatggaagaggaacaaagcaagcgtgttcgtggctttcgggaggtt
attgatttgatttccacttcccggaaacctgttgttgctcacaagtcccttaacgacttt
acatttattcattccaagttcctggctccactgccatccacaatggacgaattcagaagc
tcgttgcattcagtcttccccaacatacttgacgtcaatcatctaatgaaggaaatcggt
cctctaaataaatacaccaacgtacctgcagctatttcctacttgaaaagaaacttcttt
gcacctatagaaatagagatacctcaaaaagctagtgtggaggaaagcaagaatcatggc
cataacgttgtgagaataagcgagttgtttgcgaaactctgctttatcctaaaaatcgct
ccagaaaccgaaacccacaaccctgatgggccttcaacacttaaatgctactccaatgtg
ttaaatcttggttccaacagcttccaagactctaacgaggatgatgacatcagtgcatgg
actcataatccaacgaaaatcagcatcaacaatctgcttttcttgtggggtttcagaagt
ggcacatctgccagaagattgaagaacttgctctgcaagtcccacgagaagttgtcggaa
gatgtttttgatgttcgactagtggacaagaattgtgctgttgttgtgttctggaaaaca
ggactgtcggaatggtttctgaccaccattgattctggagatggcgaactcagggaactg
gcagcagaagggttgatggcggtaggctacgaagcatataagagggtctgtaaatctgag
attttaggagcagatttggcagattcattagcggagtttgatagggaggcctcggaggct
catacagaggagtctgccgaagtatactggaacaatgagctgatgatcaatttggatgat
ctttga
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