Cynara cardunculus var. scolymus (artichoke): 112507317
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Entry
112507317 CDS
T05604
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112507317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112507317
Enzymes [BR:
ccav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
112507317
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112507317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
DUF3467
Motif
Other DBs
NCBI-GeneID:
112507317
NCBI-ProteinID:
XP_024967617
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All DBs
Position
LG 2:complement(68752598..68761027)
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AA seq
728 aa
AA seq
DB search
MLLLYRASQSRGHEEVSETVKEDIGMKQHWMVRAISKTLTLIPIPFHSSRASFSSPSSSF
ALKNVTRSNFELSLADLRRHVRDSDFVSIDLEMTGVTSAPWRESFEFDRFDVRYLKVKDS
AEKFAVVQFGVCPFRWDSTKQSFIAHPHNFYIFPRQEVGAYDPSYEFLCQTASIDFLAKY
QFDFNLCVKEGISYLSRALEDAARLHLHSTHEDELSESPCTTKEIKDVPLVRMADILFVE
RMRNKISEWHDDLLQIRNRRSSQIPEDSNDSMNQFQTIFFRMRPAIKLNGFTSRQLRLIK
SVIQKSFKDLAYIRVNGASCLEQFIVYTNSRRDLELLMKEVKGDLCKEAEMKIGAAIGFR
HVIDLLSSEQKLIVGHNCFLDIAHVCRKFVGPLPSNLEEYVTLVQKNFPYIIDTKILLNA
SNVLQLKMKKSSTSLSKAFAILCPHIASGVSSSGLAPSSVTVEVQVDDMRSSNWNSGAKH
EAGYDAFMTGCIFAQSCSHLNIDFSSHSMLMKEEKLQKYINLLYLSWSCGDIVNIKTGGT
TTESSAFNTFKIQPTKILFPNIAIIWGFPSKLKAREIKESLCKVFGLTSVTSIYHLDRTA
VFVQFNKSELVSDFLELKSRLEKKNDAISVFHPLSELLEGGNTRAASYEVYKEICGSPIS
KVLFADQAEAVGINLNTKLLENKVQENGSFANSQSPIDTKTADIKQPLKCTSGSSKFPKG
EMLDIVSC
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgctgctactttacagagcctctcaaagtcggggtcatgaagaagtatcagagactgtg
aaagaggatattggtatgaagcaacattggatggttagggcaatctccaaaaccctaacc
ctgattccaattccgtttcattcatctcgtgcttccttttcctccccttcttcgagtttc
gctctcaagaatgttactaggtccaactttgagttgtctcttgctgaccttcgtcgtcac
gtcagagactcggattttgtgtcaattgacttggaaatgactggagtgacgagcgctcct
tggagggagtcatttgagtttgacagatttgatgttcgttatctcaaggtgaaggactct
gctgagaagtttgcagttgttcagtttggggtttgccccttccgttgggactccaccaag
cagtcattcattgcccatccgcacaacttttacatatttccccgtcaagaagttggagct
tatgacccatcttatgagttcctgtgccagactgcctcaattgattttttggcaaagtac
cagtttgatttcaatctgtgtgtaaaagaaggaatatcttatttatctagagcactagaa
gacgcagctagattacacttacattcaacacatgaagatgagttatcagagtcaccatgc
acaaccaaagaaattaaagatgttccattggttagaatggcagatattctttttgtggag
agaatgaggaacaaaatcagtgaatggcatgatgacctgttacagattagaaatagaagg
tccagccagattccagaagactctaatgactccatgaatcagtttcagaccatctttttt
aggatgcgtccagccatcaaactgaatggattcacttcccgccagctaaggttgattaag
tcggttatacaaaagagcttcaaagatttagcttacatccgtgtaaatggtgcttcatgt
ttagaacaatttatcgtctacacaaactccagaagggacctagagttgcttatgaaagag
gttaaaggagacctttgcaaggaagcagagatgaagattggagctgccattggctttcgg
catgtgattgacctcctttcctccgaacaaaagttgattgttggacacaattgctttctt
gatattgcacatgtatgtagaaagtttgtgggtcctcttccttcgaatcttgaggaatat
gtaaccttagttcaaaagaactttccatacataattgacacgaagatcctcctgaatgca
agtaatgtattgcaattaaagatgaagaagagtagcacttcactgtccaaagcttttgcc
attctctgcccacatattgcttctggtgtcagcagctctggcttggctcctagttctgtc
acagttgaggttcaagtggatgatatgagatcatcaaactggaactctggagctaagcat
gaagctggttatgatgctttcatgacagggtgcatttttgcccaatcatgcagtcatctt
aatattgatttcagctctcactcaatgttgatgaaagaagagaagcttcaaaagtacatc
aatcttctttacctcagttggagttgtggagatatagttaacataaaaactggtggaact
acaacagaatcttcagcatttaacactttcaaaatccaaccaacaaagattttgtttcca
aatattgccataatttggggcttcccgtcaaagctcaaggcaagggagataaaagaatct
ctttgtaaagtttttgggttgacctcagttacatccatctaccacttggataggactgct
gtgtttgttcagtttaacaagtccgaattggtttctgattttctggaactgaaatcgaga
cttgagaagaagaatgatgctatttctgtttttcaccccctttcagaacttctggaaggt
ggaaacacccgtgctgcctcttatgaggtatacaaagaaatttgtggttcccccatttcg
aaagtcctgtttgctgatcaagctgaagctgttggtattaatttgaacaccaaattgtta
gaaaataaggtccaagaaaatggttcgtttgcgaattcacaatctccaattgataccaag
acagcagacatcaaacaaccattaaagtgtacctcaggtagcagcaagtttcctaaagga
gaaatgctagatattgtatcctgctga
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