Cynara cardunculus var. scolymus (artichoke): 112507433
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Entry
112507433 CDS
T05604
Name
(RefSeq) transcription elongation factor SPT6-like isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112507433
03036 Chromosome and associated proteins [BR:
ccav03036
]
112507433
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
112507433
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
112507433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HTH_44
HHH_9
Tex_central_region
S1
SH2
HHH_3
Tex_N
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
112507433
NCBI-ProteinID:
XP_024967790
LinkDB
All DBs
Position
LG 2:complement(4395371..4403739)
Genome browser
AA seq
1611 aa
AA seq
DB search
MAGKTVLSDEEDEIEVEEDEREEPDGDAVDPEDRDEEDEEDEEGEDEYEKDGFIVDDVDE
DEQDAEEEDRADSDEERQRKKKRKKRESEKNYVLDEDDYELLQDNNITGFRRPKVESKKF
KRLKKARADADEGQSGFSDEEEYNRSGKGGRSAEEKLKRSLFGDDEGPPIEDIAEEDQPE
EEEDGDIGEEEDEMADFIVDEEEVDEHGEPTRRRKVNKKKSRQAPGVSSSAMQEAHDIFG
DVDELLRQRKLGLEKINRFDETGEWRERKLEDEFEPIILSEKYMTEKDDHIREIDIPERM
QISEESTGPPPTDDMSIDEQSNWILNQLGTSMAPLFGKGGTRTTEEGHELAILKDDVMRF
LEFMHVQKLDVPFIAMYRKEECRSLFKDPESQADKNQSNSDQKPKLRWHKVGYTMQVLWA
ILELDRKWLLLQKRKSALQSYYNKRFEEERNVYDETRLHLNQKLFDSITKSLKVAESERE
IDDVDSKFNLHFPPGEHNVDEGQFKRPKRKSQYSICSKAGLWEVASKFGYSSEEFGLLIS
LEQMRMDELEDAKETPEEVASTFTCAMFVNPQAVLRGARHMAAVEISCEPCVRRHVRSIF
MDNAVVSTSPTSDGNVAIDSLHQFAGIKWLKDKPLTRFEDAQWLLIQKAEEEKLIQVSVK
LPVSVHDKLISDAHDYYLSDGVSKSAQLWNEQRKLIIKDAFDGLLLPSMAKEARALLTSR
AKNWLLMEYGRLLWGKVSVAPYQKKDHDVNSSDDYEAAPRVMACCWGPGKPATTFVMLDS
YGEVLDVLYAGSLSIRGQSVADQQRKKNDQQRVVKFMTDHQPHVVVLGAVNLSCARLKED
IYEIIFKMVEDNPRDVGHEMDGLSIVYADESLPHLYENSRISSDQLQPQPGIVKRAVALG
RYLQNPLAMVATLCGPSKEILSWKLSPLESFLTADEKYGMVEQIMVDATNQVGLDVNLAI
SHEWLFAPLQFISGLGPRKAASLQRSLVRASSIYTRKDLLNHGLGKKVFVNAVGFLRVRR
SGNAASSSQFIDLLDDTRIHPESYGLAQELAKDIYSADNQDDVNDDDDMLEMAIEHVREN
PNLLKSLEVNAYAKSKKRENKKDTLHHTRLELIQGFQDWRTKYAEPSLDEEFYMISGETE
DTLSEGRIVQATVRRVQPQRAICNLESGLTGMLSKEDYSDDRRDNDLTERLNEGDILTCK
IKSIQKNRHQVFLSCRENDLRSDRSQNYRAMDPYYHEDRDNSENDKEKARKAKELAKKHF
KPRMIVHPRFQNITADEAMEMLSDKEPGESIVRPSSRGPSYLTLTLKIYDGVYAHKDIIE
GGKENKDITSMLRLGKTLKIGEDVFEDLDEVMDRYVDPLVGHLKTMLAYRKFRDGVKAEV
DESLRKEKSENPSRIVYSFGISHEHPGTLILTYIRSSNPHHEYIGLYPKGFKFRKKMFEE
IDRLVAYFQRHIDDPHDAGPSIRSVAAMVPMRSPATGGSGGWGGSNSNESGWRGSSGDRE
RTSTPSSRSGRSDYRNGGGHDAHPSGVPRPYGSGGGRGRGRGGRGYHNRGNEGGSKEGED
GWGSFPGAKTQNSPGREAFPGGWVDGGSKRSSVQSQAGGSGGGGAGWSTGW
NT seq
4836 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaaaaccgtattatcagacgaagaagatgagattgaagtagaagaggacgag
agggaagagcctgatggggacgcagttgatcctgaagatcgtgacgaagaggacgaagaa
gatgaagaaggagaagatgagtatgagaaagacggattcatagtggacgatgttgatgaa
gatgaacaggatgcggaagaagaggacagggcagatagtgatgaggagaggcaaaggaag
aagaaaagaaagaaaagagaatcggagaagaactatgttctagatgaagatgactacgag
ctcctccaagacaataacatcactggctttcgtcgtccaaaagttgagagtaaaaaattt
aagcgactaaaaaaagcaagggctgatgctgatgaagggcaatcaggattttccgatgag
gaggaatataataggagtggaaagggtgggcggagtgcagaggagaaactcaaacgtagt
ttatttggggatgatgagggtcctcccatagaggatattgctgaagaggatcaacctgaa
gaggaagaggatggagacattggtgaagaagaagatgaaatggccgacttcattgttgat
gaagaagaggttgatgagcatggagaaccaacaaggaggaggaaggttaacaagaaaaaa
tctaggcaggccccaggagtttcctcctccgcaatgcaggaggctcatgacatatttggt
gatgttgatgagctcttgaggcaacgcaaattgggactagaaaagatcaacaggtttgat
gaaactggtgaatggagggaaaggaagcttgaagacgagttcgaaccgatcattctttca
gagaagtacatgactgagaaggatgaccatatacgggagatagacattccagaaagaatg
cagatatccgaggaaagcactggtcctccgccaacagatgatatgagtatagacgagcag
agtaactggattcttaatcaacttggaacgagtatggcgcctttgtttggcaaaggaggt
accaggacaactgaagaagggcatgagctagcaatacttaaggatgatgttatgcggttt
ttggaatttatgcatgttcagaaattagatgtaccttttattgctatgtataggaaggag
gagtgccggagcctttttaaggatccagaatcgcaagctgacaagaaccaaagtaactct
gaccaaaaacccaaactgaggtggcacaaggttggatatactatgcaggtactttgggct
atcttggagctagacagaaagtggttactgcttcaaaaacggaaaagtgctctacagtcg
tactacaataagcgatttgaagaagaacgaaatgtgtatgatgaaacacgtcttcatttg
aatcagaaactgttcgattctattaccaagtccctcaaagttgccgagtcagaaagggaa
atcgatgatgttgactcaaaatttaayctgcactttccacctggtgaacataatgtggat
gaaggacagttcaagagaccaaagagaaaatcacagtatagcatytgtagcaaagctgga
ctatgggaggttgctagcaagtttggctatagctccgaggaatttggattgcttatttct
cttgaacaaatgaggatggatgaattggaggatgcaaaggaaaccccagaagaggtggca
tcaacatttacatgtgcaatgtttgtaaatcctcaagctgtcctcagaggcgctagacac
atggcagcagttgagattagttgygaaccatgtgtcaggagacatgtacgtagcatcttc
atggataacgcggtggtgtcgactagtcccacttctgatggcaatgtggctatagattct
cttcatcaatttgcggggatcaagtggttgaaggacaaacctttgacaagatttgaggat
gcccaatggcttcttattcaaaaagctgaggaggagaagcttatccaagtttctgttaag
cttccagtatcagttcatgataaattaattagtgatgcccatgactactatcttagtgac
ggtgtgagtaaatctgctcaattgtggaatgaacaaaggaagttgataataaaagatgct
tttgatgggttgcttttaccttctatggcgaaagaggcaagagcgttgttgaccagcaga
gcaaaaaactggttactcatggaatacggaaggctattatggggcaaagtctctgtggca
ccttatcagaaaaaggatcatgatgtcaattcctcagatgattatgaagctgcaccaaga
gttatggcatgctgttggggacctgggaagcctgcaacaacatttgtgatgttggattca
tatggggaagttcttgatgtgctatatgcgggttccctaagtatacgtggtcaaagtgtt
gctgaccaacaacgtaaaaagaacgatcaacagcgggttgttaagttcatgacggatcac
caacctcatgttgttgttctgggagctgtgaatttgtcttgcgctcggctaaaggaggat
atttatgagatcattttcaagatggtagaagataacccaagagatgttggccatgaaatg
gatggtttaagcattgtatatgctgatgagtctctcccacacttgtatgaaaattctcgt
atatcatctgatcagcttcagccgcaacctggcattgttaagcgtgctgtggcccttgga
cgttatcttcaaaatcctttagcaatggttgctaccctctgtggaccatcaaaggagata
ttatcatggaaacttagtcctctggaaagctttctgaccgctgatgagaaatatggcatg
gttgaacaaattatggtagatgctactaaccaagtgggtctcgatgtgaatttagccata
agccatgaatggttattcgctcctctacagtttatttccgggcttggacccagaaaagct
gcttctcttcagaggtccttagtgagagctagttcaatatataccagaaaggacttgttg
aaccacggtcttggcaaaaaggtgtttgtaaatgcagttgggttcttacgtgttcgccga
agtggaaatgctgccagcagtagtcagttcattgatttgttggatgatacaagaatccac
ccggaatcatatggtcttgcacaggagttggctaaagatatttatagcgcagataaccaa
gatgatgtgaacgacgatgatgatatgcttgaaatggcgatagagcatgtgagagaaaat
cctaatttattgaagagtcttgaggtcaatgcgtatgccaaatccaagaaacgggagaat
aagaaagacacgctccatcatacgagattggagctgatacaaggttttcaggactggcga
acaaaatatgcggaacctagtctggatgaagagttttatatgatctctggggagacagag
gacacactttccgagggtagaattgtgcaggcaactgttcgtagggttcaacctcaaaga
gcaatatgtaatcttgagtcgggattgactggtatgctcagcaaggaagattatagtgac
gaccgtagggacaatgatttgactgagaggttgaatgaaggtgatatcctaacgtgcaaa
ataaaatcgattcagaaaaataggcatcaggtcttcttaagctgtagagaaaatgattta
aggagcgaccgatctcaaaactatagagccatggatccgtattatcatgaagaccgtgac
aattccgaaaatgataaagaaaaagctcgtaaggcgaaagagttggcaaagaaacatttc
aagccaagaatgattgttcatcctcgattccagaatattacagccgatgaagcaatggag
atgctgtctgataaggaacctggtgagagtattgttcggcctagctctcgtggaccctca
tacttaactttgacgctcaagatctacgatggtgtttacgctcacaaagacattatcgaa
ggcggaaaggagaacaaggacattacaagtatgctgcgccttggaaaaacactaaaaata
ggagaggatgtatttgaagatctggatgaggtaatggatcggtatgttgatccattagta
ggtcacctgaagacgatgctggcataccgcaagtttagagatggggtaaaagcggaagtt
gacgagagcttaaggaaagaaaaatctgagaatccatcgagaattgtttactcctttggt
atatctcatgaacatcccggcacccttatcctaacgtatatacggagttcaaatccacat
catgagtatatcggactgtatccaaaagggtttaaattccgcaagaagatgtttgaggaa
attgatagattggtggcgtattttcaacgacacattgatgatccacatgatgctgggccg
tcaattcggtcagttgcagccatggtgccaatgcgcagcccagcaactggtggttctggt
ggttggggtggttccaatagcaatgagagcgggtggagaggctcgtctggagatcgagaa
agaacttctactccgagctctagaagtggtagaagtgattacaggaacggtggcggtcat
gatgcacatccgagcggtgtgcctaggccttacggcagtggtggtggtcgtgggcggggg
cgaggaggacgagggtatcacaaccgaggaaacgagggtgggtcgaaggaaggggaagat
gggtggggtagctttccaggtgcaaaaactcaaaactctccaggaagggaagcttttccc
ggtggttgggttgacggtggcagcaagagaagttctgtccaatcacaagccggaggaagt
ggcggtggcggtgctgggtggtcgactggatggtag
DBGET
integrated database retrieval system
