Cynara cardunculus var. scolymus (artichoke): 112507444
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Entry
112507444 CDS
T05604
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X1
KO
K05391
cyclic nucleotide gated channel, plant
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
112507444
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ccav04040
]
112507444
Ion channels [BR:
ccav04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
112507444
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Motif
Other DBs
NCBI-GeneID:
112507444
NCBI-ProteinID:
XP_024967809
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Position
LG 1:complement(45050040..45081632)
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AA seq
751 aa
AA seq
DB search
MDAVEKDEVPMLTDTDWPSDRHEHNPQRRLSHRNRSVSISILPSSNELNSSPTTPVCFTG
PLCGGRKTPRQGNPSQSIHGAIGTERREHVEQENIRMHNHQLGDHKNEHLLRSGQLGMCN
DPYCTTCPSSYNYKEKPKNSRGRFVIGREHHVKWWARTKLSLLKQFTFGVMNPHAKVVQQ
WNQFIVISCLLAIFLDPFFFYLLSTNKGNKCILINWPMTQTIVVFRSMTDLIYAMHMLVQ
FRLAFVSPESRVVGAGDLVDHPKKVALHYLSGFFFFDLLIVLPLPQIIVLCILPNAIASS
GANYAKNLLRSCVLVQYVPRLYRFLSLLAGQSPSGFLFESAWANFIINLLTFVLSGHVVG
SCWYLLGLQRVNQCLRDACHNSGIKHCMKFLDCGHGNVGRYAADPAWKVWKEDENSSACF
NEDGFPYGIYVKAVKLTAEPSVITRYVYSFFWGFQQISTLAGNQTPSYFVWEVLFTMGII
GLGLLLFALLIGNMQNFLQGLGRRRLEMSLRRRDVEHWMSHRHLPEELRRKVRESERYNW
AATRGVNEERLMENLPEDVQRDIRRHLFEFVKKVRIFALMDEPILDAICERLRQKTYIKG
GKTLYQGGVVTKMVFIVRGKMESMGEDGSKVPLVEGDVCGEELLRWCLEDSSVNGDTRNQ
IKPRYILLSNRTVECLTNVEAFVLRAADLEEVTSLFAGFLRNHRVQIAIRNESPYWRGLA
ATTIQVAWRYWKKCRDRAYTPHGGGTTLPSS
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atggatgctgttgagaaagatgaggtgccaatgttaactgatacagactggccatctgat
agacatgagcataatccacagcgaaggttgtcacacaggaacagaagtgtttcaatatcc
atcctaccgagctccaatgaattgaattccagtccaacaactcctgtctgctttacaggt
cccttgtgtggtggaagaaaaacaccaagacaagggaatccttcacagtccatccatggt
gccattggcacggaaaggagagagcatgtggaacaagaaaacatcagaatgcataatcat
caactgggagatcataaaaatgaacacttattgaggtcaggacaattgggaatgtgcaat
gatccttactgtacaacatgcccaagttcttataattacaaggaaaaacctaagaactca
agaggaagatttgtgatcggaagagagcatcatgtaaagtggtgggcaagaacaaagtta
tccttgctgaaacagttcacatttggggtcatgaatccacatgctaaagttgttcagcaa
tggaaccaattcattgtcatttcttgcttattggccattttcttagatccctttttcttt
tacctgctgtcaacgaataaggggaataagtgcatattaatcaattggccgatgacgcaa
accattgtggtattcagaagcatgacagaccttatttacgccatgcacatgttagttcag
ttcaggttagcattcgtttctccggaatcaagagttgtgggtgctggagacttggttgac
catcctaaaaaagttgccttacattatctttctggattttttttcttcgacctgttaatt
gtattaccacttcctcagataattgtattgtgtatcctaccaaatgccattgcatcatcg
ggagctaattatgcaaagaatcttttgcgatcatgtgttcttgttcagtacgttcccagg
ttataccggtttctgtctcttcttgctggccaatctccaagtggcttcctatttgagtcg
gcatgggcgaactttatcatcaatcttctgacttttgtcttgtctggtcatgttgttggg
tcatgctggtatctcctcgggttacagagagtgaaccaatgccttcgagatgcttgtcat
aactctggaatcaaacattgcatgaagtttctagattgtgggcatgggaatgttgggaga
tatgcagcggatccggcatggaaagtttggaaagaagatgaaaattccagtgcttgtttt
aacgaagatggtttcccttatggaatttacgtgaaagctgtcaaactcaccgctgaacct
agtgtaatcacaagatatgtttactcctttttttgggggtttcagcaaatcagcacactg
gctggcaatcaaactccaagttattttgtgtgggaggtcctttttactatgggcatcatt
gggcttggacttctactttttgcccttcttatcggaaacatgcaaaactttcttcaaggt
ctcggacgcagacggcttgaaatgtcacttagacgacgtgatgttgagcactggatgagc
caccgacacttgccagaagaactacgaagaaaagttcgcgagtctgagcgttataattgg
gctgccacccgaggggttaatgaagaaaggctaatggagaatttgcctgaagacgtgcaa
agagacatacgccggcacctttttgagtttgtgaagaaagtccggatatttgcgctgatg
gatgaaccaattttagatgcaatatgtgaacggttaaggcaaaagacatacatcaaagga
ggcaaaactttatatcaaggaggggttgtgacgaagatggtttttattgtaagagggaag
atggagagcatgggagaagatgggagtaaagttccactagtggagggcgatgtatgtggt
gaagaacttctcagatggtgccttgaagattcttctgttaatggagatacaagaaaccag
ataaaaccaagatacatattgcttagcaacaggacagtggaatgcttaacaaatgttgag
gcatttgttcttcgggcagcagatcttgaagaagtcaccagcctttttgctggattcttg
aggaatcaccgtgttcagattgccataaggaacgaatctccatactggcgaggcctggcg
gcaaccaccatccaggtggcatggagatactggaagaagtgccgagatcgtgcatacacc
ccacatggtggtggtactactcttccctcctcctag
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