Cynara cardunculus var. scolymus (artichoke): 112507751
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Entry
112507751 CDS
T05604
Name
(RefSeq) probable RNA helicase SDE3 isoform X1
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112507751
03036 Chromosome and associated proteins [BR:
ccav03036
]
112507751
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
112507751
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
112507751
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
112507751
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
Viral_helicase1
AAA_22
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SLFN-g3_helicase
AAA_7
PhoH
NPHP3_N
Ribosomal_S13_N
LTD
ATPase_2
AroM
Motif
Other DBs
NCBI-GeneID:
112507751
NCBI-ProteinID:
XP_024968209
LinkDB
All DBs
Position
LG 2:25576230..25583868
Genome browser
AA seq
984 aa
AA seq
DB search
MGSVNYDDETRSTISDHGDIGNVDFANDGSFYDYDPGNEGPIIISVPFPLVEGKPQFVAV
GETTFNSITIKNTTTDAVTLWSVEIYDSKPKDSFTLSVMEPPSHGSHEEYIRSFVESFSL
EDRTLQAGKTLTIWLSCKAMVKGLHTTAVHFNVDDDRIERMGFIMAEDKISRSLTSNRPY
NRPRRNKPLLPRIFSPGGDNVGIKIIRGSRPAKASGRVYRYKLPEYPIPKNVRDMIESKT
TPDSLIEGLTRTSYVSFFRTLLIMEEIKLEDDMRTYDMQGVALKRKYGCLALEVPGLAER
RPSLVCGDFILAKPTYQKEDMSALYKGHILRVEAEEIHLSFHDDLHCYHSEGDRYDVQFE
YNRLGMRRLYQAVEAAGKLDTELLFPEFSSNSRCIETSPLVPISCKLNEEQMSSVEMILG
CKGGPPYVVHGPPGTGKSVTLTEAILQLYTTRRNTRMLVCAPSNSAADNILEKLVMENAE
KIRKGHLLRLNAQARSLEDIRSDYLEFCCINEEESVFNCPIFEQLVKYRIVISTYTSAAL
LYAEGLQAGHFTHIFLDEAAQASEPETMIPISHFYRRNTTVVLAGDPVQLGPVIFSKDAE
SYGLGKSYMERLCECRFYKEGDQNYVTKLVRNYRCHKKILFLPSELFYKGDLISCKEEDT
LYPLTWKELLPDAEFPVLFLGVQGVDEREGNNPSWFNRIEVSEVVEIIMNLIEKGLRSQD
IGVITPYRQQVLKINRALETFVKSEIKVGTVESFQGQEREVIIISTVRSTIKHNETDKRH
CLGFLSNPRRFNVAITRARSLLIVIGNPHIICKDEYWNKFLWHCADNGSYKGCFLPEKEE
IVDVGSEGEYNNWNGGEQTSFDDWSANEKNNPRGENWGMPAAAEADDWGDYPSQAPAGAD
EWGDYPSETPTAADNWGDYSTQTPDNWGENSSQTSVNWGKYPTEASSGPDNWGQDSIQGA
ADNWGEDLKQTPTGAADNWGEDLK
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgggttcagtcaactacgatgatgaaacgaggtccaccattagtgatcatggggatatt
ggcaatgtggattttgcaaatgatggatctttctatgattatgatccagggaatgagggt
ccgattatcatatcagttccttttcctctagtcgaagggaagcctcagttcgtagccgta
ggtgaaactacatttaattctatcaccattaagaacacaaccactgatgcagtaactctg
tggtcagttgagatatatgactcgaaaccaaaggactcatttacactctcagtaatggaa
cctccctcacatggttcacatgaggaatatatccgatcatttgtcgagtcattttccttg
gaggacaggactttgcaagctggtaaaaccttaacaatttggttatcgtgcaaagcaatg
gtcaagggtctgcacacaacggctgttcactttaatgtcgatgatgataggatagagagg
atgggttttatcatggctgaagataagatatcacggtctttgacttctaacagaccatac
aacagaccaaggagaaacaagccattgctccccagaatattttcccctggaggggataat
gtgggcatcaaaataatcaggggctctcgtcctgccaaggcttctggtcgagtatacaga
tataagcttccagaatatccgatccccaagaatgttagggatatgattgaaagtaagacg
actcctgattcgctaatcgaaggtttaacaagaacgagctatgtctctttctttagaacc
ttgcttattatggaagaaataaaattagaggatgacatgagaacatatgacatgcaaggt
gttgctctgaagagaaaatatgggtgcctggctcttgaagttccaggactggctgagaga
agaccgtcactcgtttgtggagatttcattcttgcaaaacctacatatcagaaggaagac
atgtctgccctgtataaggggcacatcttacgtgttgaggctgaagagattcacctatca
tttcacgatgatcttcactgttaccattctgaaggtgatcgctatgatgtacaatttgaa
tataaccgattgggcatgcgaagattataccaggcagtagaagctgcaggaaagttagat
acagaacttctcttccctgagttttcttcaaattctagatgcattgaaacctctccattg
gttccaatctcttgtaagctcaatgaggagcaaatgagttcagttgagatgatccttggc
tgcaaaggaggccctccatatgttgttcatggtccacctggtactggtaaatctgtgact
cttactgaagctatccttcagctctacacaactcgaaggaatacccgaatgcttgtttgt
gcaccttcaaatagtgctgcagataacatcttagagaaacttgttatggagaatgctgaa
aaaatccgaaaggggcacttgttgaggctcaatgcacaagctcgttctttagaggatatc
cgatctgattatctggaattttgttgtattaacgaggaagagagtgtctttaactgtcct
atatttgaacaacttgtgaagtataggattgtaatatcgacttatacaagtgctgctctt
ctgtatgcggaaggccttcaagctggccacttcacacatatcttcttggatgaggcagcc
caggcatcagagcccgaaacaatgatccctatatcccatttttacagaagaaatacgaca
gttgttcttgctggggatccagtgcagctaggtcctgtaattttttctaaagatgcagaa
agttatggtttagggaaatcatacatggagaggctgtgtgaatgtagattctataaggaa
ggtgatcagaattatgtgactaaattggtaaggaactaccgttgccacaaaaaaattttg
ttccttccttcagagttgttctataagggggatctaatctcgtgcaaagaagaggataca
ttgtaccctttaacttggaaagaactccttcctgacgcagaatttccggtacttttccta
ggcgtccaaggtgttgatgagagagaagggaataacccatcatggtttaataggattgag
gtaagtgaggtagttgagattatcatgaatttgatagagaaggggctgcggagtcaagat
attggggtcataacaccgtacaggcagcaggtactcaaaataaacagggcacttgaaact
tttgtcaagtcagagatcaaagttgggacagtggagtcatttcaagggcaagaaagggaa
gtcataatcatatctactgttcgatcaacaatcaaacacaacgagactgacaagagacat
tgtttgggatttttgagtaatccgagacgctttaatgttgccattacacgagccagatca
ttgttgattgttattgggaacccacatataatatgcaaggatgaatattggaacaagttc
ctatggcattgtgctgataatggctcttataaaggctgctttctcccagaaaaagaagaa
attgttgatgttggatccgaaggagagtataacaattggaatggtggagagcaaacaagt
tttgatgattggagtgccaatgagaagaacaaccccagaggtgagaattggggcatgcct
gcagcagcagaagccgatgattggggcgattacccctctcaggcacctgctggagccgat
gagtggggagattacccctctgagacacctacagcagccgataattggggagattactct
acccagacacctgataattggggcgaaaactcctctcagacatctgttaattggggcaaa
tatcctactgaggcatcttcaggacctgataattgggggcaagactcgatacaaggagct
gctgataactggggggaagacttgaaacagacgcctacaggagctgctgataactggggg
gaagacttgaaatag
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