KEGG   Cynara cardunculus var. scolymus (artichoke): 112508201
Entry
112508201         CDS       T05604                                 
Name
(RefSeq) polyubiquitin 9
  KO
K03873  elongin-B
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    112508201
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ccav04121]
    112508201
   03400 DNA repair and recombination proteins [BR:ccav03400]
    112508201
Ubiquitin system [BR:ccav04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul2 complex
    Adoptor protein
     112508201
   Cul5 complex
     112508201
DNA repair and recombination proteins [BR:ccav03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     112508201
SSDB
Motif
Pfam: ubiquitin Rad60-SLD UBL_UBAC1 Dsc3_N DUF2604
Other DBs
NCBI-GeneID: 112508201
NCBI-ProteinID: XP_024968758
LinkDB
Position
LG_2
AA seq 104 aa
MAMYIRVKRNKTTYFLQCDATEKVLDIKQKLHSLIDQPVNDQRLILAATGEVLDDSKTLA
DQKVENDAVVALTLRKDDNEFEDVNIVRPNDFYQSRDTDTTGNW
NT seq 315 nt   +upstreamnt  +downstreamnt
atggctatgtacattcgtgttaagcgcaataaaacgacctattttctgcaatgtgatgca
actgagaaagttctagacattaagcagaagttgcatagcctaattgatcagccagttaat
gaccagcgtttaattttagcagcaaccggagaagtcttggatgattcaaagacattggca
gatcaaaaggttgagaatgatgctgttgtggcacttacactgagaaaagatgacaatgaa
tttgaggatgtgaacatagtgaggccaaatgacttttatcagtcccgtgatacagacact
actggcaattggtaa

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