Cynara cardunculus var. scolymus (artichoke): 112508217
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Entry
112508217 CDS
T05604
Name
(RefSeq) pre-mRNA-splicing factor 38
KO
K12849
pre-mRNA-splicing factor 38A
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112508217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112508217
Spliceosome [BR:
ccav03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112508217
Complex C
U4/U6.U5 tri-SnRNP related factors
112508217
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP38
HIND
Motif
Other DBs
NCBI-GeneID:
112508217
NCBI-ProteinID:
XP_024968772
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Position
LG 2:59586922..59594375
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AA seq
383 aa
AA seq
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MANRTDPSAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
HGGNRKPTPFICLVMKMLQIQPDKEIVVEFIKNEDYKYVRVLGAFYLRLTGTDIDVYRYL
EPLYNDYRKLRRKLGDGQYALTHVDEVIDELLTKDYSCDIALPRIKKRLTIEAIGALEPR
KSALEDDFEEEEEKDEDDQLMDTDIGSHDKDYYRGQSPTRERGRDRKRDSHRHRERDHER
EYERDYERDRGRGRDRDRDRDRDRERYRERDYREREREREGRERDRRDRERGSRRRSPSR
SRSRSRDRDRDRKDRDHDGEERRRRHARDNSSSPRRGAAEDEKPPKKKKEKEKKKDDGTD
HPDPEIAEANRIRASLGMKPLKL
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcgtacggacccatcggcaaagagcataaggggaacaaacccacaaaaccta
gttgagaagatattgaggtctaagatttaccaaaacacctattggaaggagcaatgtttc
ggacttacagcagagacgcttgtggacaaagccatggagctggatcacctcggcggcaca
cacggcggcaaccgcaagcccacgcctttcatttgcctcgtcatgaagatgctccagatt
cagcctgataaagaaatcgtcgtcgaattcatcaaaaatgaagattataaatatgtacga
gtattgggagccttttacttgcgacttacaggcacagatattgatgtgtaccgttatcta
gagcctttgtacaacgactacaggaaactgagacgcaaattaggtgatgggcaatatgcg
ttgacacatgtggatgaggttatcgacgaactcttgacaaaagattattcctgtgatatt
gctctgccacgcataaagaaaaggcttactattgaagccattggtgctctagaacctaga
aaaagtgcacttgaagatgattttgaggaggaagaggaaaaggatgaggatgaccagctc
atggatacagatattgggtctcacgataaggattactatcgtggacaaagcccaacaagg
gaaagaggccgagataggaaacgtgacagccatagacatagggagcgagatcatgaaaga
gaatatgagagagattatgaaagggatcgtggaagaggacgtgatagggatagggatagg
gatagagacagggagcggtatcgtgaaagggattatagagaacgggaaagggagagggaa
ggtagggaaagggatagacgtgacagggagcgtggaagcaggaggaggagcccatcacgg
agcagaagcagaagtagggatagagatagagacagaaaggatcgtgatcatgatggtgaa
gaacgacgcaggcggcatgcacgtgataacagcagtagccctagaagaggggcagcagag
gatgaaaagcccccaaagaagaagaaagagaaggagaagaagaaggatgatggaacggac
catccggatccagaaattgctgaagctaacaggatacgtgcatcgctcggtatgaagcct
ctgaagctatga
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