KEGG   Cynara cardunculus var. scolymus (artichoke): 112508523
Entry
112508523         CDS       T05604                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112508523
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccav03019]
    112508523
   03041 Spliceosome [BR:ccav03041]
    112508523
Messenger RNA biogenesis [BR:ccav03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     112508523
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     112508523
Spliceosome [BR:ccav03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    112508523
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_PARP14_3 Nup35_RRM_2
Other DBs
NCBI-GeneID: 112508523
NCBI-ProteinID: XP_024968935
LinkDB
Position
LG 3:39277965..39284507
AA seq 391 aa
MDHHGDVGIHPYVNGDDEQLRFDNVNQNHENYDDNVDDSGGGGGNEMRHSINDSSRESSA
GKLFVGGIAWETSEESFSNYFSNYGELTDSVIMMDKISGRPRGFGFVTFANPADADKVLE
QDHVIDGRPVEVKRTVPREDMQVNRGVSRTKKIFVGGIPLTLTEDELREYFSSYGGIIEH
QIMLDHVTGRSRGFGFVTFDSEEAVEKIFADGQLHELGGKRVEIKRAEPKRAGGDFPFDN
QGRRGGGSKSYGGFGRGSGGYGGKADRGYDDYGGGYAGYDSYGAGYGGGSAGFYGGYGGY
GYGFGFGGPMYGGAGFAGAGYGGYGGPAGYGGGRAYGSGSGYGGKGFSRGGGSGGYGYGY
GYDGSKGYDNSGGGGSSGGGSGGARFHPYRK
NT seq 1176 nt   +upstreamnt  +downstreamnt
atggatcatcatggcgatgttggaatccacccttacgttaatggcgacgatgagcaacta
cggtttgataacgtgaatcaaaatcatgaaaattatgatgataatgtagatgatagtggt
ggtggtggaggcaatgagatgaggcattcaatcaatgacagtagtcgtgaatcttcagca
ggaaaactttttgttggaggcattgcttgggagacttcagaagaatccttcagcaattac
ttcagcaattatggagaattgacagattctgtgataatgatggataaaatttctggtcgg
cctcgtgggtttggatttgtaacatttgctaacccagcggatgctgataaagtcttggaa
caagatcatgtcatcgatggcagaccagttgaagtgaagaggaccgttccgagagaagat
atgcaggttaatagaggggtatcgagaacgaagaaaatctttgttggtgggataccattg
actttaacagaagatgagttaagggagtatttctcttcgtatggtggtataattgagcat
cagattatgctagatcatgtcacaggacgatcaagaggcttcggttttgttacatttgat
agtgaagaagccgtggaaaagatatttgccgatggtcaactccatgaacttggaggcaaa
cgagtggagataaagagggcggagccaaaaagagctggcggtgatttcccatttgacaac
caggggcggcgtggtggtggttccaagtcgtatggcggttttggtaggggttcaggtgga
tatggtggaaaagcggatagagggtatgatgattatgggggtggatatgctggttatgac
agttatggggccggctatggaggtggctctgcgggtttctacggtggttatggtggatat
gggtatgggtttgggtttggtgggcctatgtacggtggtgctggatttgcaggtgctggt
tatggtggttatggtgggcctgctggctatgggggcggtagggcttatggaagcggtagt
ggttatggtggtaaaggatttagtaggggtggtggttctggtggatatggatatgggtat
gggtatgatggtagtaaagggtatgataacagtggtggtggcggcagcagtggcggcggc
agtggtggtgctaggtttcatccgtacaggaagtaa

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