Cynara cardunculus var. scolymus (artichoke): 112508549
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Entry
112508549 CDS
T05604
Name
(RefSeq) LOW QUALITY PROTEIN: ABC transporter B family member 19-like
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
112508549
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ccav02000
]
112508549
04147 Exosome [BR:
ccav04147
]
112508549
04090 CD molecules [BR:
ccav04090
]
112508549
Enzymes [BR:
ccav01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
112508549
Transporters [BR:
ccav02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
112508549
Exosome [BR:
ccav04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112508549
CD molecules [BR:
ccav04090
]
Proteins
112508549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_16
RsgA_GTPase
AAA_29
AAA_22
ABC_ATPase
AAA_25
AAA_21
nSTAND1
Zeta_toxin
DUF815
SbcC_Walker_B
Motif
Other DBs
NCBI-GeneID:
112508549
NCBI-ProteinID:
XP_024968984
LinkDB
All DBs
Position
LG 3:complement(13912..22402)
Genome browser
AA seq
1451 aa
AA seq
DB search
MKKSTVAAGTTNHLFVHESLQLLPSLIWGGGGKLPAIFSRYNCISVSFFPINTTTVVSWM
FFGLPCAALSDKIYGGLMEAMVVHGDVMRFSSVDLPSMTMPLNSSVSLEIIEQQPDCAQN
QKQKGIRLFPKRAIMQGVVAMLRIQIRKTEYDTLKVRGNPYESVPFWKETRHGILAYTRK
EYAARRRQTKANVNSLVSCTMRKVTDDEKQILNDQPLPFSKLLSYADGLDYTLMALASLG
SIIHGLAQPLGYLLLGKAIDAFGNNINDDIGMVKALKKVIPFVWYMAFATFPAGIIEVGG
WMYASERQVARLRLAYLKAVLKQEIGAFDTELTNGKIITGISNHMGIIQDAIGEKLGHFI
SCFATFFTGVVIAFISCWEVSLLTLFVVPMILMIGATYTKKMNSISATKTAYLAEATVMV
EQTISQIRTVFAFVGESSAIKSFSDCMQRQLIISKGEALIKGVGTGVFQTVTFCSWALIV
WIGALVVVAKRAQGGDVIAAVMSILFGAISITYAAPDMQIFNQARAAGKEVFEVIERKSL
ISYDSKGAILEKINGNIEIRGVHFAYPSRQEKLILQGFSLSIPAGKVVALVGSSGCGKST
IISLVPRFYDPEKGEVLVDNHNVKDLDLKFLRENIGAVSQEPALFAGTIKDNMKVGKKDA
DDEQIQIAATMANAHAFISQLPNQYLTDVGQRGVQLSGGQKQRIAIARAILKNPPILLLD
EATSALDSASEKLVQDALESAMKGRTVILIAHRMSTIVNADMIVVVQNGQVTETGTHSSL
LQTSEFYSSLFSMQNISAEGESRFVXANVPSSEXMSVCINLFVQIENTERVDQQVVEQVE
PVDKHIESNKILKDAPKQEDQHDGSVKKDVFFRIWFGLNNREFVKIGVGSCAAAFSGISK
PVFGFFIITIGVAYYKHGAKEKVGWYSLLFSAIGLLSLFSHTLQHYFYGVIGEKAMTNLR
QALYSAVLRNELAWFDKPENSVGSLTSRIINETSTVKTIISDRMAVIVQCISSILIATIV
SMIVNWRMGLVAWAVMPCHFIGGLIQAKSAKGFSGDTAAAHSELVSLASESATNIKTVAS
FCHEEHILERAKLSLDGPLRKSRKQSVHYGFIQGVSLCLWNIAHAVALWYSTVLVEKKQA
SFEDGIRSYQIFSLTVPSITELWTLIPTVISAINVLTPVFQALDRQTEIEPDEPENPPSE
RIKGEIEFRNVNFTYPSRPEVTILDNFTLRIEAGSKVALVGPSGAGKSSVLALLLRFYLP
LGGLILIDGRDITRYNLRNLRRQIGLVQQEPLLFSCSIRDNICYGTEGSSESEVIEVSRE
ANIHEFVSNLPDGYETVVGEKGCQLSGGQKQRIAIARTLLKNPAIMLLDEATSALDAESE
RAVVSAMESINRNGISQSTQITVAHRLSTVVHSDKIVVMEKGKVVEIGTHSALVAASEGI
YSRFYRIQSMK
NT seq
4356 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagagcaccgttgcggctggcacaaccaaccatctatttgttcatgaatccctg
caattgcttccgtcgctgatctggggtggaggaggaaagttaccggctatcttttcaaga
tacaactgcatctctgtttctttctttcccatcaatactactaccgtcgtgtcgtggatg
tttttcggccttccctgtgcagctttatcagataaaatatacggagggttaatggaagcg
atggtcgtccatggtgatgtcatgagattttcttctgtggatttaccatctatgactatg
ccactcaactcatcagtctcactagaaatcatagaacagcaacccgactgtgcccagaac
cagaagcagaaaggtatacggttgtttccgaaacgggcaattatgcaaggggttgttgca
atgctgagaatccaaatccgaaagaccgagtatgataccttaaaagtaagaggaaacccg
tacgaatctgttcccttttggaaggagaccaggcatggcatattagcttacactcgaaaa
gaatatgctgcaagaagacggcaaacaaaagcaaatgtcaacagtttggtttcatgcaca
atgaggaaagttacagatgacgaaaaacagattctgaatgatcagccattgccgttcagc
aagcttttaagctatgccgatggactggattacactctaatggctcttgcatctttgggt
tctattatacatggtcttgcccagccacttggttatctgctactcgggaaagccatagat
gcattcggtaataatataaatgatgatattggtatggtgaaagccctcaagaaggttata
ccgtttgtatggtacatggcctttgctacatttcctgctggaattatagaagttggtggg
tggatgtatgcaagtgagagacaagttgcacggttaagactcgcatatctgaaagcagtt
cttaaacaagagatcggcgcttttgacacggaattgacaaacggaaaaatcatcacggga
attagtaatcatatgggtatcatccaagacgctattggcgagaagttgggacatttcata
tcatgcttcgcaaccttctttaccggggttgtaatagcttttatatcatgctgggaggtg
tcgctgctcaccttgtttgttgttcctatgattctcatgattggagccacttatacgaag
aaaatgaactctatatcagccacgaaaacagcttacttggcagaagccacagtaatggtc
gaacagacaatttctcagatcagaaccgtgttcgcttttgttggagaaagctccgcgata
aaatctttctcagattgcatgcagagacagttaatcattagcaagggagaagcgttaatc
aaaggagttggaacgggcgtattccaaacagtgacgttttgttcttgggctctgattgtt
tggattggagctcttgttgttgtagccaaaagagctcaaggaggggatgttatcgctgca
gtcatgagcatcctctttggagccatatcaatcacgtatgcagcaccggacatgcaaatc
ttcaatcaagcaagagctgcaggaaaagaagtgtttgaggtgattgagaggaaatctctt
ataagttatgattcaaaaggggcgattcttgaaaagattaacgggaacatcgagattcgt
ggcgtccattttgcttacccgtcacgccaagagaaactgatccttcagggattctcgtta
tccatcccagcaggaaaggttgtggctctagtaggtagtagcgggtgtgggaaaagcacc
atcatctctctcgtgccaaggttctatgatcctgaaaaaggtgaggtccttgtcgacaac
cacaatgtcaaggatcttgatttaaagtttctaagagaaaatataggagcagtttcacaa
gaaccggcgctctttgcgggcacgatcaaggacaacatgaaggtaggaaagaaagatgca
gatgacgaacagatccagattgcagcaactatggcaaatgcacacgctttcatatcccaa
ctcccgaatcagtacttaacggatgtaggacaaaggggtgtacaattatcgggcggacag
aaacaaagaattgctattgcaagagccatattgaaaaatcctccaattcttttgctcgat
gaggcaacgagtgcacttgattccgcgtctgagaagttggttcaagatgcactcgagagt
gcaatgaaagggagaacagtcatcttaattgcacataggatgtcgaccattgtgaatgca
gatatgattgtagtcgtacaaaatgggcaagtcacggagacaggaacacacagtagcttg
ctacaaaccagtgagttttacagcagcttatttagcatgcagaacatcagcgcagaaggt
gaatcgaggttcgtatgagctaatgttccatcttctgaatagatgtctgtttgtattaat
ctgtttgtacagattgaaaataccgaaagagtcgatcaacaggttgttgaacaggtagaa
ccagttgataagcatatagaatctaacaaaatcctcaaagatgctcccaagcaagaagac
caacatgatggaagtgtaaaaaaagatgtctttttcagaatctggtttgggttgaacaac
cgggagtttgtaaagatcggtgttggatcttgtgctgctgcattttccggcatctcaaaa
cccgtttttggcttctttatcataacaataggagttgcatattataagcatggcgctaaa
gagaaagtcggttggtattcactgctcttctcggctatcggtttgctttcactcttcagc
cacactttgcagcactacttttatggagtaatcggagagaaggcaatgacaaaccttcga
caagctttgtattcagctgtactccgcaacgaattagcatggttcgacaagcctgaaaac
agtgtcggttcccttacttcacgaatcataaacgagacttccacagtcaagaccataata
tccgatcgtatggctgtcatcgtgcaatgcatttcgtcgatcttgatagcaaccatcgtt
agcatgatcgttaactggagaatgggtttggtagcttgggcggtgatgccttgtcacttc
ataggcggtcttattcaagctaaatccgccaaagggttttcaggcgacacggctgcagca
cattcagaactcgtttcccttgcttccgaatccgcaacaaacataaaaaccgttgcttct
ttctgtcacgaagaacacatactcgaaagagctaaattgtctctagatggaccgctaaga
aagagtcgaaagcaaagtgtccattatggcttcattcaaggtgtgtccctttgcctatgg
aacattgctcatgccgttgctttatggtattcgaccgttttggttgaaaaaaagcaagcg
agtttcgaagacgggataagatcataccagattttctcgcttacagtaccgtcaatcacc
gagctatggactctaatcccaaccgtaatatctgccattaacgtattaactcctgtattt
caagctctcgaccgacaaaccgagattgaacctgacgaacccgagaacccaccttctgaa
aggataaaaggagaaatcgagtttcgaaatgtcaactttacttatccatcaagaccagaa
gtaacgattcttgacaatttcaccttgcggattgaagctggatcgaaggtggctctagtg
ggacccagtggagcaggaaagtcttcggttttagcccttttactacgattctatcttccg
ctaggaggactgatattgatcgatggaagagatataacacgatacaatctgagaaatcta
aggagacagatcgggttggttcaacaagaaccattactgttcagttgctcgattagagac
aacatctgttacggaacagaaggatcatcggaaagcgaagttatagaagtctcgagagaa
gcaaacattcacgagtttgtaagcaatttgccagatgggtatgagactgtggttggcgaa
aagggatgccaactttccggggggcaaaagcagagaatcgcgattgcaaggaccctgtta
aagaatccggcgatcatgctgttggatgaggcaacaagtgcacttgatgcagagtcggaa
agagctgtggtgagtgcgatggaatcgatcaaccggaatggaatcagtcaatcgacacag
attacagttgcgcataggctttctacagtagtacattctgataagatagttgtgatggag
aaaggtaaggtagtagaaattggtacacattcagcacttgtagcagcatctgaaggaatt
tattcaagattctacaggattcagagcatgaagtag
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integrated database retrieval system
