KEGG   Cynara cardunculus var. scolymus (artichoke): 112508555
Entry
112508555         CDS       T05604                                 
Name
(RefSeq) cell division control protein 48 homolog D-like isoform X1
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    112508555
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccav03019]
    112508555
   03009 Ribosome biogenesis [BR:ccav03009]
    112508555
   04131 Membrane trafficking [BR:ccav04131]
    112508555
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ccav04147]
    112508555
Messenger RNA biogenesis [BR:ccav03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     112508555
Ribosome biogenesis [BR:ccav03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    112508555
Membrane trafficking [BR:ccav04131]
 SNARE
  SNARE associated proteins
   Others
    112508555
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    112508555
Exosome [BR:ccav04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   112508555
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 AAA_33 CDC48_2 AAA_2 AAA_5 AAA_22 TIP49 NPHP3_N AAA_14 RNA_helicase AAA_17 Mg_chelatase AAA_28 nSTAND3 AAA_18 ATPase_2 Parvo_NS1 Vps4_C IstB_IS21 ABC_tran AAA_7 NB-ARC AAA_lid_PRS2_C Viral_helicase1 NACHT TsaE DUF815 AAA_24 Zeta_toxin ResIII Zot
Other DBs
NCBI-GeneID: 112508555
NCBI-ProteinID: XP_024968992
LinkDB
Position
LG 1:complement(8244821..8248870)
AA seq 812 aa
MSNQAESSDSFLVAVCSKGTKPDFSTAILERKKAANRLVVDEAINDDNSVVSLHPETMEK
LQLFRGDTILLKGKKRRDTICIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDV
KYGKRVHILPIDDTIEGVTGSLFDAYLKPYFLESYRPVRKGDFFLVRGGMRSVEFKVIET
DPPEYCVVAPDTEIFCEGEPIRREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQL
FKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKMAGESESNLRKA
FEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNR
PNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLSDDVDLEKVSKETHGYVGA
DLAALCTEAALQCIREKMDVIDLEDESIDAEILNSMAVSNEHFQTALGTSNPSALRETVV
EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK
AIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSS
QGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPD
EESRYQIFKSALRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER
EKRRSENPEAMEEDVEDEVPEIRAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGIG
SEFRFSEASGRSAATDPFAAPAVAADEDDLYS
NT seq 2439 nt   +upstreamnt  +downstreamnt
atgagtaatcaagctgaatcatctgactcttttcttgttgctgtttgtagcaaggggaca
aagccggacttcagtaccgcgattcttgagcgaaagaaggcggcgaatagacttgttgtt
gatgaagccatcaacgatgataattccgttgtctccctgcatccggagaccatggaaaag
cttcaactattcagaggggataccatcttgcttaagggcaagaaaaggagagacacaatc
tgtattgctcttgctgatgacacctgtgaggaaccaaagattaggatgaataaggttgtc
aggtctaacctgagggtcaggcttggcgatgtggtttctgtgcatcagtgtcctgatgtt
aagtatggaaagcgtgttcacattctcccaattgatgataccatagaaggtgtcaccgga
agtctgtttgatgcttacttaaaaccttactttcttgaatcatatcgccctgtgaggaag
ggtgacttctttcttgttaggggaggaatgagaagtgttgagtttaaggtcattgagact
gatccacctgagtactgtgtggttgcccctgatacagagatattctgtgagggtgagccc
ataagaagggaggatgaggaccgattggatgaggttggttatgatgatgttggtggtgtt
cgcaaacagatggcacagattcgtgagttagtagaacttcccttaaggcatccacagctt
tttaagtcgattggtgtcaagccaccaaagggtattttgctttatgggcctcctggatct
ggaaagactttgatagcccgggcggttgctaatgaaactggtgccttctttttctgcata
aatggtccggaaatcatgtcaaagatggctggagagagtgagagcaacctcaggaaagca
ttcgaggaagcagagaaaaatgcaccgtccatcatctttattgatgagcttgattcaatt
gctccgaagcgtgaaaagacacatggtgaagttgaaaggagaattgtttcccagctattg
actctaatggatgggctgaaatcccgtgcccatgttattgttatgggtgcaaccaatcgg
ccaaacagcattgatcctgccctgaggaggtttggcagatttgacagggaaattgatatt
ggcgttcctgatgaaattggtcgtcttgaggttcttcgtattcatactaagaacatgaag
ctctctgacgacgttgatttggagaaagtttccaaagagacacatgggtatgtaggtgct
gatttggcagctttatgcaccgaggcggcactgcaatgcatcagagagaagatggatgtg
attgatttggaagatgagtccattgatgccgagattctgaactccatggcagtgtcaaat
gaacactttcagacagccctcggcaccagcaatccttctgctctgcgtgaaactgttgtg
gaagttcccaatgttagctgggaagacattggtggcctcgagaatgttaaaagagagctt
caagagaccgtccaatatcctgtcgaacatcctgagaaatttgagaagtttggcatgtca
ccatcgaaaggagttctcttctacggtccacctgggtgtggtaaaactcttcttgcaaag
gctattgcgaatgaatgccaggccaacttcatcagcattaagggtcctgaattgcttaca
atgtggtttggggagagtgaggccaatgttcgtgaaatcttcgacaaggctcgtggatct
gctccctgtgtcctctttttcgatgaactggattccattgctactcagagaggaagcagt
caaggagatgctggaggtgcagctgatagagttctgaaccaacttttgactgaaatggat
ggaatgtccgccaagaagaccgtcttcattattggtgcaaccaacaggcctgatattatt
gatcctgcacttttgaggcctggccgtcttgatcagttgatatacatcccccttccagat
gaggagtctcgttaccagatattcaaatctgctttgaggaaatcgccagtttctaaagac
gtagacctacgagctcttgccaagtacacccagggcttcagtggcgctgatatcacagaa
atctgccagcgtgcctgcaagtacgccattcgtgagaacatagagaaggatattgagagg
gaaaagagaagaagcgagaacccagaagctatggaggaggatgtggaagatgaggtgccc
gaaatcagagctgctcactttgaagagtcgatgaagtttgcacgcaggagcgttagtgat
gctgatatccgcaagtaccaagcttttgctcaaacactgcagcagtctagaggaattggt
tcggagttcaggttctcagaggcgagtgggcgtagtgctgccaccgacccttttgctgcc
ccggctgttgcagccgacgaagatgacctctatagttag

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