Cynara cardunculus var. scolymus (artichoke): 112508555
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Entry
112508555 CDS
T05604
Name
(RefSeq) cell division control protein 48 homolog D-like isoform X1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112508555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112508555
03009 Ribosome biogenesis [BR:
ccav03009
]
112508555
04131 Membrane trafficking [BR:
ccav04131
]
112508555
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccav04147
]
112508555
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
112508555
Ribosome biogenesis [BR:
ccav03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
112508555
Membrane trafficking [BR:
ccav04131
]
SNARE
SNARE associated proteins
Others
112508555
Autophagy
Aggrephagy
Other aggrephagy associated proteins
112508555
Exosome [BR:
ccav04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112508555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_33
CDC48_2
AAA_2
AAA_5
AAA_22
TIP49
NPHP3_N
AAA_14
RNA_helicase
AAA_17
Mg_chelatase
AAA_28
nSTAND3
AAA_18
ATPase_2
Parvo_NS1
Vps4_C
IstB_IS21
ABC_tran
AAA_7
NB-ARC
AAA_lid_PRS2_C
Viral_helicase1
NACHT
TsaE
DUF815
AAA_24
Zeta_toxin
ResIII
Zot
Motif
Other DBs
NCBI-GeneID:
112508555
NCBI-ProteinID:
XP_024968992
LinkDB
All DBs
Position
LG 1:complement(8244821..8248870)
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AA seq
812 aa
AA seq
DB search
MSNQAESSDSFLVAVCSKGTKPDFSTAILERKKAANRLVVDEAINDDNSVVSLHPETMEK
LQLFRGDTILLKGKKRRDTICIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDV
KYGKRVHILPIDDTIEGVTGSLFDAYLKPYFLESYRPVRKGDFFLVRGGMRSVEFKVIET
DPPEYCVVAPDTEIFCEGEPIRREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQL
FKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKMAGESESNLRKA
FEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNR
PNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLSDDVDLEKVSKETHGYVGA
DLAALCTEAALQCIREKMDVIDLEDESIDAEILNSMAVSNEHFQTALGTSNPSALRETVV
EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK
AIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSS
QGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPD
EESRYQIFKSALRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER
EKRRSENPEAMEEDVEDEVPEIRAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGIG
SEFRFSEASGRSAATDPFAAPAVAADEDDLYS
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatcaagctgaatcatctgactcttttcttgttgctgtttgtagcaaggggaca
aagccggacttcagtaccgcgattcttgagcgaaagaaggcggcgaatagacttgttgtt
gatgaagccatcaacgatgataattccgttgtctccctgcatccggagaccatggaaaag
cttcaactattcagaggggataccatcttgcttaagggcaagaaaaggagagacacaatc
tgtattgctcttgctgatgacacctgtgaggaaccaaagattaggatgaataaggttgtc
aggtctaacctgagggtcaggcttggcgatgtggtttctgtgcatcagtgtcctgatgtt
aagtatggaaagcgtgttcacattctcccaattgatgataccatagaaggtgtcaccgga
agtctgtttgatgcttacttaaaaccttactttcttgaatcatatcgccctgtgaggaag
ggtgacttctttcttgttaggggaggaatgagaagtgttgagtttaaggtcattgagact
gatccacctgagtactgtgtggttgcccctgatacagagatattctgtgagggtgagccc
ataagaagggaggatgaggaccgattggatgaggttggttatgatgatgttggtggtgtt
cgcaaacagatggcacagattcgtgagttagtagaacttcccttaaggcatccacagctt
tttaagtcgattggtgtcaagccaccaaagggtattttgctttatgggcctcctggatct
ggaaagactttgatagcccgggcggttgctaatgaaactggtgccttctttttctgcata
aatggtccggaaatcatgtcaaagatggctggagagagtgagagcaacctcaggaaagca
ttcgaggaagcagagaaaaatgcaccgtccatcatctttattgatgagcttgattcaatt
gctccgaagcgtgaaaagacacatggtgaagttgaaaggagaattgtttcccagctattg
actctaatggatgggctgaaatcccgtgcccatgttattgttatgggtgcaaccaatcgg
ccaaacagcattgatcctgccctgaggaggtttggcagatttgacagggaaattgatatt
ggcgttcctgatgaaattggtcgtcttgaggttcttcgtattcatactaagaacatgaag
ctctctgacgacgttgatttggagaaagtttccaaagagacacatgggtatgtaggtgct
gatttggcagctttatgcaccgaggcggcactgcaatgcatcagagagaagatggatgtg
attgatttggaagatgagtccattgatgccgagattctgaactccatggcagtgtcaaat
gaacactttcagacagccctcggcaccagcaatccttctgctctgcgtgaaactgttgtg
gaagttcccaatgttagctgggaagacattggtggcctcgagaatgttaaaagagagctt
caagagaccgtccaatatcctgtcgaacatcctgagaaatttgagaagtttggcatgtca
ccatcgaaaggagttctcttctacggtccacctgggtgtggtaaaactcttcttgcaaag
gctattgcgaatgaatgccaggccaacttcatcagcattaagggtcctgaattgcttaca
atgtggtttggggagagtgaggccaatgttcgtgaaatcttcgacaaggctcgtggatct
gctccctgtgtcctctttttcgatgaactggattccattgctactcagagaggaagcagt
caaggagatgctggaggtgcagctgatagagttctgaaccaacttttgactgaaatggat
ggaatgtccgccaagaagaccgtcttcattattggtgcaaccaacaggcctgatattatt
gatcctgcacttttgaggcctggccgtcttgatcagttgatatacatcccccttccagat
gaggagtctcgttaccagatattcaaatctgctttgaggaaatcgccagtttctaaagac
gtagacctacgagctcttgccaagtacacccagggcttcagtggcgctgatatcacagaa
atctgccagcgtgcctgcaagtacgccattcgtgagaacatagagaaggatattgagagg
gaaaagagaagaagcgagaacccagaagctatggaggaggatgtggaagatgaggtgccc
gaaatcagagctgctcactttgaagagtcgatgaagtttgcacgcaggagcgttagtgat
gctgatatccgcaagtaccaagcttttgctcaaacactgcagcagtctagaggaattggt
tcggagttcaggttctcagaggcgagtgggcgtagtgctgccaccgacccttttgctgcc
ccggctgttgcagccgacgaagatgacctctatagttag
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