Cynara cardunculus var. scolymus (artichoke): 112508597
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Entry
112508597 CDS
T05604
Name
(RefSeq) SWI/SNF complex subunit SWI3A isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112508597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112508597
03036 Chromosome and associated proteins [BR:
ccav03036
]
112508597
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112508597
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112508597
PBAF complex
112508597
GBAF(ncBAF) complex
112508597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
DUF4530
DUF4501
Motif
Other DBs
NCBI-GeneID:
112508597
NCBI-ProteinID:
XP_024969034
LinkDB
All DBs
Position
LG 3:complement(35784434..35789629)
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AA seq
645 aa
AA seq
DB search
MESSHHQILKPFLPADDHRFEFELYTIPGSSGWFSWDNIHEIEKASLKEFFDGTSFTRNP
RVYKEYRDFIISKYREDPSRRLTFSEVRKSLVGDVNYLLKVFLFLEKWGLINFGAPLPSS
SVIGGEDGDLVREDEEAGRWKVKVEEGPPHGVRVVAIPNSLKPVSLPASVTSNNGSRFAD
SDFKMPPLSSHSDVYQELIELVCESCKERCESGHYEYTKDASSIICIKCFKNGTYGKNKS
IDDFKFVDDNPDDGNRVAVWTEAETLLLLESVLKHGDDWDLVAQNVQTKSKPECISKLIQ
LPFGQLMLGSAYDRCRYRDTNSNINNQKRGQVGPPAPQETKDIRIQHIELESKAQSQQNG
DADSEGPPPKRICIAPISDSSNSKMEQTDNEVEQVAPSLVVPEEIRENESQVCELKNHKQ
QDGDLDDHCPPKSDRSKPVPNVSNSLMRQVTRISAVVGPHVAASAAEAAITALCDENQIP
KEIFDREENGNELRLSTQTTESDRIGQGNDSEMDARPNESEKSIIPLPLRMRATTATALG
AAAAHAKLLAIQEDREVERLVSTIINTQLKKLQYKMELLKEVEAIMEKELSEMAEVEESV
VGERMEVVQKVMDAGLSRWRDGHGSTMVNAKPPHPQPQPQVEIML
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggagagctcacaccaccaaattttaaaaccattccttcccgccgacgatcatcgcttc
gaattcgaactctacaccatccccggcagctccggttggttttcctgggataacattcac
gaaatcgagaaagcttcactcaaggagtttttcgacggaacttcgtttactagaaaccct
agggtgtataaagagtatcgagatttcattatttccaagtatcgggaagatccttctaga
aggctaaccttctccgaagtccggaaatccttggtaggcgacgttaattatcttcttaag
gtgtttctgtttctcgaaaagtgggggttgattaattttggtgctccattgccgtcgtcg
tcggtgattggtggtgaagatggtgatttggttagggaggacgaggaggcagggaggtgg
aaggttaaggtggaggaagggcctcctcatggggttagggttgttgcgattccaaattcg
ttgaagccggtttcattgccggctagcgtgacttctaacaacggctcccgttttgctgac
agtgattttaaaatgccaccgctttcttctcattcggatgtttaccaggaattgatagaa
ttggtctgcgagagttgcaaggagcggtgcgagtctggtcattacgagtacacaaaggat
gcgagttccatcatttgtatcaagtgcttcaaaaatggaacttatggaaagaacaagtct
attgatgatttcaagtttgtcgatgacaatcctgatgatggaaatcgtgttgctgtgtgg
actgaagcagaaacattacttcttttagaatctgttttgaagcatggagacgactgggat
cttgtggcgcaaaatgttcaaaccaagagtaaaccagagtgtatttccaaacttatacaa
ttacctttcggtcagcttatgttgggatctgcatatgatagatgcagataccgggacacc
aatagtaatataaacaaccagaaacgaggacaagtaggcccaccagcacctcaagagact
aaagatatcagaattcaacatattgaacttgaaagcaaagctcaaagtcaacagaacggt
gatgctgatagcgaaggcccccctccaaagagaatatgcattgcaccgatttcagattcc
agcaactcaaagatggagcagacagataatgaagtagaacaagtagcaccatctttagtt
gtccctgaagagattagagaaaatgaaagtcaagtttgtgagctaaagaatcataagcag
caagatggagatctagatgaccactgtcctccgaagagtgatcgttctaaacccgtcccc
aatgtcagtaattcactaatgcggcaggttacccgcatctctgctgtggtcggtccacat
gttgcagcttctgcagcagaggctgctattacagccctttgtgatgaaaatcaaattcca
aaagaaatatttgatcgcgaagaaaatggcaacgagttacggttgtctacacagacaacc
gagtctgacaggattggtcaaggcaacgattcggagatggatgcaaggcctaatgaatca
gaaaagagtataatacctttaccactacggatgagagctacgactgcaacagctctgggt
gccgcagctgcgcatgccaagttattagcaatccaagaagatcgagaagttgaacgttta
gtgtcgaccataattaatacacagttgaaaaagttgcaatataagatggagctgttgaaa
gaggtagaggcgataatggagaaagagttgagtgagatggcggaggtggaagaatcagtg
gtgggggagcgaatggaggtggttcagaaggtgatggatgcagggttaagtagatggaga
gatggtcatggtagtacgatggtgaatgcgaagcctccccatcctcaacctcaacctcaa
gtagagattatgctctaa
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