KEGG   Cynara cardunculus var. scolymus (artichoke): 112508669
Entry
112508669         CDS       T05604                                 
Name
(RefSeq) WD repeat-containing protein RUP2-like
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04120  Ubiquitin mediated proteolysis
ccav04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    112508669
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    112508669
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ccav04121]
    112508669
Enzymes [BR:ccav01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     112508669
Ubiquitin system [BR:ccav04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    112508669
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     112508669
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML EIF3I Beta-prop_DCAF4 WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_DCAF12 WD40_like WD40_MABP1-WDR62_1st Beta-prop_WDR90_POC16_2nd Beta-prop_SCAP Beta-prop_WDR19_1st Beta-prop_CAF1B_HIR1 ACT_ACR9_3rd
Other DBs
NCBI-GeneID: 112508669
NCBI-ProteinID: XP_024969129
LinkDB
Position
LG 3:5320574..5321770
AA seq 374 aa
MKNFSSESDPILPSQIPDQEERSSAKCEWDFRISAVISSFVTDGPISDTLGVIEVNSSGT
LFATGGIARKIRVYSLSSLLSISPSGAEEPPLVDHATACLFCICTPAKLSSLKWKPGFAG
RVMGSADYDGVVTEYDLETKMSIFERDEHNGRRVWSMDYSHWDPVVGASGSDDGTMQMWD
PRHDGGKCVATVQLGSPVCCVEFCPFGGAMLAVGCADRKAYVYDVRKMDKAVAVFNGHER
TVSYTRFLDDRTVMTSGTDGCLKMWDVENQRLIRTYRGHTNQRRFVGLSIWRNEGLIGCG
SESNEMFVYDKRWGEPIWVHGFEPEGGTRRSEYGFVSSICWSQQGEDECTLVGGGSDGVV
KTFSGKRKPLINLR
NT seq 1125 nt   +upstreamnt  +downstreamnt
atgaaaaacttctcatctgaatcagatccaattctaccatctcaaattcccgatcaggag
gagagatcatcagccaagtgtgagtgggacttccgtatctccgccgtgatttcttccttc
gtcaccgatggacccatctccgacaccctaggtgtcatagaagttaactcctccggcacc
cttttcgccaccggaggtattgctcggaaaatcagagtttacagtttgagttccttgcta
tcgatatcaccaagtggggcggaggaaccaccgttggtcgaccatgccactgcatgcctt
ttttgcatatgtaccccagcaaaactgagcagcctcaaatggaaacccgggttcgccggc
cgggtcatgggttccgccgattacgatggagttgtcacagaatatgatctggagacaaaa
atgtcaatttttgagcgcgacgagcacaacggccgacgagtttggagcatggactactcc
cattgggacccggtggtcggagcatctggttccgatgacggaaccatgcaaatgtgggac
ccacgccatgatggcgggaaatgtgtggctaccgtacaattagggagtcctgtttgttgt
gtggagttctgcccatttggtggcgcaatgttagccgttggatgtgctgaccgaaaagcc
tacgtttacgatgtgaggaaaatggacaaggcagtggcagtctttaatgggcatgaaaga
accgtgagttacacgagattcttggatgatcgtacggtgatgacttcgggtacagacgga
tgcttaaagatgtgggatgtagagaatcaaaggctgatccgaacgtacagagggcatacg
aaccaaagaaggttcgtgggattatcgatttggagaaatgaaggattgattggatgtggg
tcggagagcaacgagatgtttgtatacgataagaggtggggtgaaccgatatgggttcat
gggttcgaaccagagggtggaaccaggaggtctgaatatgggttcgtcagtagcatatgt
tggagccaacaaggggaagatgagtgcaccttggttggtggtggttccgatggagtcgtg
aagactttttccggtaaaagaaagccgttaattaacctccgttaa

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