Cynara cardunculus var. scolymus (artichoke): 112508690
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Entry
112508690 CDS
T05604
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 2
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccav03036
]
112508690
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
112508690
microRNA pathway
RISC loading complex
112508690
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
DEAD
Dicer_dimer
ResIII
Helicase_C
PAZ
AAA_22
SNF2-rel_dom
Cas3-like_C_2
SWI2_SNF2
VPg
dsrm
Motif
Other DBs
NCBI-GeneID:
112508690
NCBI-ProteinID:
XP_024969158
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Position
LG_3
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AA seq
1386 aa
AA seq
DB search
MASNGNGNNDEQTADHFSFARCYQIEALEQAMKQNTIVFLETGSGKTLIAIMLLRRYAHL
FRKPKPFISVFLVPTVVLVKQQAEAVRKHLDLKVEEYWGEKGVDYWNAADWKKQQDENEL
LVMTPAILLDALRHKFLSLDIIKVLIFDECHNAKKRHPYALIMTEFYHRELHLGGSQLPR
ILGMTASPVKAKVSNSSSDYWKQIDKLETLMNSKVYTCASESVLSEYIPFSSAKYMFYKN
VESPSHVFEELKSNLLILRNKHNSAIRKXNLSESSMDNAMRRLSKLSSTFEFCLDELGIF
LASKAAEAYSCEANDLFSWGTLDVRXETIAREFCKDANTVFTSYIPXGLEWSITHINEAS
VSIGLLSTKVMSLIKALAEYRHVDDMRCIIFVERVITAIVLKSLLNELQXYLFGWKTEYT
AGNXSXXQSQSRGVQNKIVDEFRKGXVNIIVATSILEEGLDVQSCNLVIRFDLSSTVCSF
IQSRGRARMRDSDFLLLIRSGDVETLKKVNNYMQSGKIMREESLKNASRPCQPLDSELLD
EVVYRVESTGACLSLSSSISMVYFYCSRLPSDGYFKPYPRFVIDEVSGTCSISFPKSCPL
PSVHVEGKVKWLKQLACLEACKQLHVMGALTDNLVPDTVEKAVDPLETVFFVVPAYEHVE
EQVQYMPPELIGQFGNDSTKLYHFYSIKLKKNFDYDVPLQDIVLGVSTKFELDDEEISFD
LEADRGSIGISVTYTGTCLLTSEQIILSNRFQMTVLRVLLDHSIMKLKNSFDALRLKNDH
VMCDYLLLPSNGLHKNPSVIDWKSVRSVXFPFGSATKCSLTGDDHQKVHTKNGLTCSCLV
ENCLACTPHNGRLYCTTKRFLDLNSKSAMQNKEGEAITYKDYYKKRYGIDLEHEEELFFS
ARPLFSVRNRLQRGRYHEEKETSRAGVELPSELCXILMTPISISTFYSFSFVPSIMHRIE
SLLLALNLKEMHLGRSRPNGNIPTLKVLEAITTKKCLEPFHLESFETLGDSFLKYAASQQ
LFKTLQDQHEGILSSRREKIISNDSLCKLGCNSKLPGFIHNEPFDMKTWVLDNNIXKTEK
CIPLSXKVVADVVEALIGVFLVEGGEMAALSFMSWLGINVDJVNQPYIRNVTLEPERFLN
VQHLESLLGYSFXDASLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVHLYNKYP
GMSPGLLTDLRSASVNNDCYAQSAVKVQLHKHILHGSQDLHRHIVSTVHDFDLLSVTSTF
GWESETTFPKVLGDVIESLAGAIXVDSGYDKDRVFKSIRPLLEPLITPETLKLHPVKELH
DLVQKNHLEVKSSAKRLDNGTISFTIEVETDDGVFKDTCMAADKKMAERLASKSVLKSLK
ASLLGS
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcaatggaaatggaaacaatgacgaacaaactgctgatcatttctcatttgcg
agatgctatcagatcgaagcattagagcaagctatgaagcagaacacgatagtgttcttg
gagactggatcaggaaaaacattgattgccattatgcttctacgtcgctatgcacatctt
ttccgaaaaccgaaaccttttatttctgtttttttggtacccactgtggtattagtcaaa
cagcaagctgaggctgttagaaagcacttggatcttaaagtcgaagaatattggggagag
aaaggggtagattactggaatgctgctgattggaagaagcagcaagatgaaaatgagcta
ctcgttatgactcccgccattttgcttgatgcgttgaggcataaatttctaagcttggat
atcatcaaggtgctgatatttgatgaatgtcataacgcgaagaaaagacacccatatgca
ctaattatgacggagttctatcatcgtgagttacatcttggtggttcccagcttcccaga
atacttgggatgacagcttcacccgtgaaagcaaaagtgtcaaactcaagttcggattat
tggaagcagattgacaaacttgaaactctgatgaattcaaaggtttatacatgtgcaagt
gaatccgtattatccgagtacatccccttctcctctgcgaagtatatgttctacaagaat
gtggaaagtccttctcacgtgtttgaggagttgaaaagtaatttgttgatcttaagaaat
aagcataattcagccatcagaaaatyaaatctttcggaatcttcaatggataatgcaatg
agaaggttgtcgaagttatcttcgacttttgaattttgtttagacgaattgggcattttt
ttggcctcaaaggcagcggaagcatattcatgtgaagctaatgacctcttttcttggggg
acgttggatgtacgtrgtgagacaattgcaagggaattctgtaaagatgccaacacagtt
ttcacctcttatatacccrgtggtttagaatggtcgatcactcatattaatgaagcaagt
gtgagcatcggcttactatcaacaaaagtcatgtcattaattaaagctctggctgaatac
aggcatgttgatgatatgcgatgtataatctttgtagagagggtgataacggcaattgta
cttaaaagcttactaaatgagttgcaatyttatttatttggttggaaaacggagtacacg
gctgggaaccmttcckccmtgcagtcacaaagccggggagtccaaaataagattgttgat
gagtttcgtaaaggaawggtcaatataattgtagcaacgtcaattcttgaagaagggttg
gacgttcagagttgtaatcttgtgatcagattcgatctttcatctactgtttgcagcttt
attcaatctcgaggtcgtgctcgaatgcgggactcggactttttattattgattcgaagt
ggcgatgtagagacattgaaaaaggtgaacaattacatgcaaagtggaaaaataatgcgg
gaggagtctttaaaaaatgcttctcgaccatgtcaaccactcgatagtgaacttttggac
gaagttgtgtatcgtgttgaatcaaccggagcttgtttgagcctgagttctagcatttcc
atggtttacttctattgttctaggctaccttcagatgggtattttaagccttatccaaga
ttcgtcatcgatgaggtttcaggaacttgcagcatctcttttccaaaaagttgcccgctt
ccaagtgtgcatgttgaaggaaaagtaaaatggttgaaacaacttgcatgtcttgaagca
tgcaagcaactacatgtgatgggtgcgttaacggataaycttgtccctgatactgtggag
aaagccgtcgacccactagaaacggtattttttgtggttccagcttatgagcatgtagaa
gaacaagttcaatacatgccacctgaacttatygggcaatttggcaatgattcaactaag
ttgtatcatttctactcgattaagttaaagaagaactttgattatgatgtcccgctccar
gatattgtgcttggagtgagcactaagtttgaacttgatgatgaagagatatcgtttgat
ctcgaggctgatagaggcagcattggtatttctgtgacgtatacaggaacgtgtttgctt
acgtctgagcagataatattatcgaatcgatttcaaatgacggtgttacgagtacttctt
gatcactcaatcatgaagttgaagaattcttttgatgcattaagattgaaaaatgatcat
gtgatgtgtgattatctcttgctcccttcgaatggcttacataaaaatccatcggtcatt
gattggaaatccgttcgttccgttcygttcccttttggaagcgcaacaaagtgttcttta
acgggtgatgatcatcaaaaagtgcacacgaagaacgggttaacgtgcagctgtttggtg
gagaattgtttagcatgcactcctcataacgggcgkttgtattgtactaccaaaagattt
cttgatttgaatagtaaatcagccatgcaaaataaggaaggggaagcgattacttataaa
gattactacaaaaaacggtatggcattgacttggagcatgaagaagaattatttttttct
gcgagaccacttttttcagttcgaaaccgtcttcaacgtggcagatatcatgaggagaaa
gaaacaagtagggcgggcgtcgagttgccttctgaactatgtkacattcttatgacacca
atatctataagtaccttctattcgttctcttttgttccatccatcatgcataggatcgag
tctttgcttcttgctctcaacttgaaagagatgcatttaggtcgtagtcggccaaatgga
aatatccccactcttaaggtcttggaggcaattacaaccaaaaaatgtcttgaaccgttt
catttggaatccttcgagactctaggcgattcgtttctyaaatacgctgctagccagcag
ttattyaaaactcttcargatcaacacgaggggatcttgagttctcgaagagagaaaata
atatcaaatgactcgttatgcaaattgggatgtaacagcaagcttccgggatttatccac
aatgagccttttgatatgaagacatgggtcctcgataataatatacraaagaccgaaaaa
tgcatcccattgtcttgaaaagtagttgcggacgttgtcgaagccttaattggcgttttt
cttgttgaaggaggtgaaatggcagccttatcgtttatgagctggcttggtataaacgtt
gacwtagtcaaccaaccctacatacgaaacgtgacgcttgaacccgagaggttcttaaac
gttcaacacttggaatctcttctcggttattcatttcrtgacgcatctttgcttgttgag
gcattaacgcatggatcttacatgctgccggagattccaagatgttatcagcgtttagag
tttcttggggatgcggtgttggattatctcatcaccgttcatttatacaataaatatccc
ggaatgtctccaggattgttgacggatttgaggtccgcttcggtaaacaatgattgctat
gcacaatctgccgttaaggttcaactgcataagcatattctccatggatctcaagaccta
catcggcatatagtttctactgttcacgactttgatcttttgtctgtgacgtctactttc
ggatgggagtcggaaaccacctttcccaaggttcttggggatgtaatagaatctctagcg
ggggcgattttkgttgattccggatacgataaagatcgagtttttaagagcataaggcct
cttcttgagccattaataactcccgagacgttaaaactacatccggtgaaggaactgcat
gatcttgtccagaaaaatcatttagaagtgaagtcgtcggccaaacggttggataacggt
acaatatcgttcactatagaagtagaaaccgatgatggtgtttttaaagacacgtgcatg
gctgctgacaagaaaatggcggaaagacttgcttcgaagtcggttttgaagtctctgaaa
gcaagtttattgggttcgtga
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