Cynara cardunculus var. scolymus (artichoke): 112508735
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Entry
112508735 CDS
T05604
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112508735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112508735
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112508735
Spliceosome [BR:
ccav03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112508735
Complex C
U4/U6.U5 tri-SnRNP related factors
112508735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
AAA_22
DEAD
PWI
AAA_19
nSTAND3
T2SSE
AAA_30
SRP54
AAA_7
ABC_tran
AAA_16
Motif
Other DBs
NCBI-GeneID:
112508735
NCBI-ProteinID:
XP_024969218
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All DBs
Position
LG 3:complement(32163753..32174848)
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AA seq
1048 aa
AA seq
DB search
MGSDLKIWVSDRLMSLLGYSQPTLVQYVISLSKKASSPSDIHSNLKDMGVSSSNETRAFA
EEIFRKVEHKNSGSNPYRQQEEEAAMLAKKQRTYKLLEADDDDENDERNGSISVAPQSKK
ADKRAKRFRKKTENQEDEDNEGAGILKEERRVKQKASREESDGSESEEERLRDQIEREEL
ERHLREKDAAKTTKLTEQKLSKREEEEAIRRANALEQDDIGALRKVSRQEYLKKREQKKI
EEIGDDIEDEQYLFANQKVSEAELRDLRNKKQIYDLVKKRSQEDDNINEYRMPDAYDIEG
GVNQEKRFSVAMERYRDSKDGDKMNPFAEQEAWEDHQIGKATLKFGSKNKKQSEDYNFVF
EDQIEFIKGQVMGGENVDDEADEEEQEKSMAKSAHEKLLADRKTLPVYPYRESLLQAIED
HQVLVIVGETGSGKTTQIPQYLHEAGYTKRGMIGCTQPRRVAAMSVAARVSQEMGIKLGH
EVGYSIRFEDCTSDKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGL
VKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRFPVEINYTKAPEADYLDAA
IVTALQIHVTQPPGDGDILVFLTGQEEIETAEEILKHRTRGLGSKIAELIICPIYANLPT
ELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFVKMKSYNPRTGMESLLITP
ISKASANQRAGRSGRTGPGKCFRLYTAYNYFNDLDDNTVPEIQRTNLANVVLSLKSLGIH
DLLNFDFMDPPPAEALLKALELLFALSALNKHGELTKVGRKMAEFPLDPMLSKMIVASDK
YKCSDEIISIAAMLSIGSSIFYRPKDKQVHADNARLNFHMGNVGDHIALLKVYSSWKETN
FSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELVSNPGDLEAIKKSITSGYFPHSA
RMQKNGSYRTVKHPQTVYIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVSELKPEWLVEI
APHYYQLKDVEDLASKKMPRGEGRASKD
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atggggagtgacttgaagatatgggtttcagacagattgatgtccctcttgggatattca
caacccacactggttcagtatgtaattagtttatctaagaaagcttcatcaccttctgat
atacatagtaatcttaaagacatgggtgtctcatcttcaaatgaaacacgtgcatttgct
gaagagatctttcgtaaagttgagcataagaactctggatcaaatccttatcgccaacaa
gaagaggaggcagcaatgctagccaagaagcagaggacttacaagctattggaggcagac
gacgatgatgaaaatgatgagcgcaatggctctatttctgttgctcctcagtcgaaaaag
gccgataaacgtgcgaaacgtttcaggaagaagactgaaaatcaagaagatgaagataat
gagggagctggaattttgaaagaagaaagacgggttaaacaaaaagcttctcgcgaggaa
tcagacggttctgagtctgaagaagaaagattgcgtgaccaaatagaacgagaggagttg
gaacgtcatctaagggaaaaagatgcagcaaagacaacaaagcttactgaacagaaattg
tcaaagagggaggaagaagaggcaattaggagagccaatgccttggaacaagatgacatt
ggagctctaagaaaagtttcaagacaagaatatctcaagaaaagggagcagaagaaaatt
gaggaaatcggagatgatatagaagatgaacagtatctgttcgcgaatcagaaagtatct
gaagctgaacttcgtgatctaagaaacaagaagcaaatatatgatctagttaagaagcgg
tctcaagaggatgataacattaatgagtatcggatgcctgatgcttacgatatagaaggc
ggagttaatcaagaaaaaagattttctgtagctatggaacgctacagagattcaaaagat
ggagataagatgaacccatttgctgaacaagaagcatgggaggaccatcagattggaaaa
gcaacactaaaatttgggtcaaagaacaaaaagcaatctgaagattataattttgtgttt
gaggaccagattgaattcataaagggacaagtcatgggtggtgaaaatgtcgatgatgaa
gcagatgaggaggaacaggaaaaatctatggcaaaatcagcacacgagaagcttctggca
gacagaaaaactttacctgtatatccctatcgggagtctttgctccaagctattgaagat
catcaggttcttgtcattgttggtgagactggttcaggaaagaccactcagataccccaa
tatctccatgaagctggatacactaaacgtggaatgatagggtgtacacagcctagaaga
gttgctgctatgagtgttgccgctagagtttctcaagaaatgggaatcaaactggggcat
gaggttggctattctatacgttttgaagactgtacttctgacaagacggtgctcaaatat
atgactgatggtatgttgctacgagaatttcttggtgaacctgatcttgcaagttacagt
gtggtgatggtggatgaggctcatgaaaggacgttgtcaactgatatcttgttcggttta
gttaaggatattgctcgcttccgtcctgacctcaagttgcttatctccagcgccactctt
gatgcagagaagttcagcgactactttgattctgctccaatttttaaaattccaggaagg
cgatttcctgttgaaataaattatacaaaagcaccagaagctgattacctggatgcagcc
attgtcacggcacttcaaatccatgttactcaaccccctggagatggtgacatattggtc
tttctcactggccaggaggaaattgaaacagccgaggagatccttaaacaccgaacacgg
ggattagggagtaaaatagcagaattgataatatgtcccatttatgcaaatctccctact
gagcttcaggcaaaaatatttgaacccactcctgaaggggcacgcaaggtggtccttgcc
actaacattgcagaaacatcattgacaattgatggcatcaaatatgtcattgatcctgga
tttgttaagatgaaatcttataaccctcgtacagggatggaatcattattgatcactcct
atctcaaaagcatctgcaaatcaacgtgctggtcgatctggacgaactggtcctggaaag
tgtttcaggttgtatactgcttacaactattttaacgacttagatgacaacactgtccca
gaaatccaacgaaccaaccttgcaaatgtcgtgctcagtctcaagagtcttgggatccat
gacctgttgaattttgattttatggatccaccgccagcggaggcattacttaaagccctg
gagctactctttgccttaagtgcacttaataaacatggtgaattgacaaaggtgggtaga
aagatggcagaattcccacttgatccaatgttgtccaagatgattgttgcatccgacaag
tataaatgctcagatgagatcatttcgattgctgccatgctctccattggaagttcgata
ttttatcgtccaaaggacaaacaagtccatgcagacaatgctcgcttgaattttcatatg
ggtaatgttggggatcatatagcactgcttaaggtttacagttcatggaaggaaacaaac
ttctctacacagtggtgctatgagaattacattcaggtgaggagtatgaagcgtgcccgt
gacataagagatcaactggaggggctactggaaagggttgaaatcgagttagtatcaaac
cctggcgatttagaagcaattaagaagtccataacctcaggatacttcccccactcagca
aggatgcaaaagaatggatcctacaggactgttaaacatccccagactgtttatattcac
cccagctctggtttagctcaggtacttcctagatgggtggtataccatgagttggtgctg
accaccaaggagtacatgcgacaggtgagcgaactaaaaccagagtggctggtggaaata
gcacctcattattatcagctgaaggacgtcgaagatttggcatcaaagaaaatgcctcgt
ggggaaggtcgtgcatcgaaggattga
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integrated database retrieval system
