Cynara cardunculus var. scolymus (artichoke): 112508759
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Entry
112508759 CDS
T05604
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112508759
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112508759
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112508759
mRNA degradation factors
5'-3' decay
Lsm complex
112508759
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
112508759
NCBI-ProteinID:
XP_024969268
LinkDB
All DBs
Position
LG 3:39796521..39800854
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AA seq
128 aa
AA seq
DB search
MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLLGILRSFDQFANAVLEGACERVIVGDL
YCDIPLGLYVIRGENVVLIGELELEKEELPPHMTRVSEAEIKRAQKVEREATDLKGSMRK
RMEFLDMD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgggcgggaccggaagatatctatttgtctacttctcttgcaagttatcttgac
aagaaacttcttgtattgctaagagatggtaggaagctattggggatacttcgatctttt
gatcaatttgccaatgctgtccttgaaggtgcttgtgagcgagtaatcgttggtgatctt
tattgtgacatcccgttaggtctatatgtaatccgtggcgagaatgtcgttttaattggc
gagctggaattggagaaggaggaacttccccctcatatgactcgtgtttctgaagccgag
ataaaaagggctcagaaggtggaaagggaggctacggatctgaagggttcgatgagaaaa
aggatggagtttcttgatatggactaa
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