Cynara cardunculus var. scolymus (artichoke): 112508802
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Entry
112508802 CDS
T05604
Name
(RefSeq) probable pectate lyase 13
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav00040
Pentose and glucuronate interconversions
ccav01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112508802
Enzymes [BR:
ccav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112508802
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
112508802
NCBI-ProteinID:
XP_024969342
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Position
LG 3:complement(11004791..11007114)
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AA seq
439 aa
AA seq
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MHPSNTTLFCLLTCLFSVISSATLNLTLPYQHPNPQAVVHEVQRRLNVSIYRREMLDIGG
GCLTGNPIDDCWKCDPNWGYDRQRLADCGIGFGRFALGGKGGQYYMVTDSSDNDVVDPTP
GTLRYAVLQTEPLWIIFASSMLIKLKHELIVNSYKTIDGRGVNVAITGGGCITLQYVTNV
IIHNIRIYDCKPSGNADIRSSPTHVGRRGLSDGDGISISGSRNIWIDHCSLSHCTDGLID
AILGSTAITISNSYFTHHNEVMLMGHDDAYLPDKGMQVTFSFNHFGKGLIQRMPRCRHGY
FHVVNNDFTEWKMYAIGGSANPTINSQGNRYIAPPDPNAKEVTKRVEANEKNWAGWHWRT
DGDLMENGAYFVPSGEDMSAMYAKATSIDPKSAFLVDQLTMNAGVFGGPRYTSYVIYVID
FLNHHNFDFNHISHVKIMW
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgcatccttccaacaccaccttgttttgccttttaacttgtctcttctctgtcatcagc
agtgccactcttaatctcacacttccatatcaacatcccaatcctcaagcagttgttcat
gaagttcaaaggagattaaatgtatcgatatacagaagagaaatgctggacatcggcggc
ggctgtctcaccggaaacccaattgacgattgctggaagtgcgaccccaactggggctac
gaccggcaacgcctagctgactgtggcattgggttcggacggttcgcgttaggcggcaaa
ggaggccagtattacatggtcaccgactcctccgataacgacgtcgtcgatccaactccg
ggaaccctccgctacgccgtcttacaaactgaacctctatggatcatctttgcatccagc
atgctcatcaaactaaaacacgaattgatcgtcaacagctacaaaaccatcgacggccgt
ggcgtcaacgtcgcaatcaccggcggtggttgtatcaccctccagtatgtcaccaacgtc
atcattcacaatatacgtatctacgactgtaaaccctccggcaacgccgacatacggtca
agtccaacgcatgttggccgtagaggcttatcggacggtgacggaatttcgatttccggg
tcaagaaacatatggatcgatcactgctctctttctcattgtacagacggcttgattgat
gcaattcttggatccaccgccattacaatttcaaacagttatttcactcatcataatgaa
gttatgctcatgggacatgatgatgcatatctgcccgataaagggatgcaggttacgttt
tcatttaatcattttgggaaagggttgattcagagaatgccaagatgtagacatgggtat
tttcatgttgtaaataacgatttcaccgaatggaagatgtacgccatcggtggcagtgca
aatccaacgatcaacagtcagggtaaccgctacatcgctccacccgatcctaacgcaaag
gaggttacaaagcgagtggaagcaaacgagaagaattgggcagggtggcattggaggacg
gatggcgacttgatggaaaatggcgcgtattttgtgccctctggtgaagacatgagtgct
atgtatgcaaaggcgactagtatcgaccctaaatcagcctttctagtcgaccaactcacg
atgaacgccggcgtctttggtgggcccaggtacacgtcttatgtaatttatgtgatcgac
tttttaaaccatcataatttcgattttaatcatatatcgcatgttaagatcatgtggtaa
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