KEGG   Cynara cardunculus var. scolymus (artichoke): 112508856
Entry
112508856         CDS       T05604                                 
Name
(RefSeq) autophagy-related protein 16-like
  KO
K17890  autophagy-related protein 16-1
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04136  Autophagy - other
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04136 Autophagy - other
    112508856
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ccav04131]
    112508856
   03029 Mitochondrial biogenesis [BR:ccav03029]
    112508856
Membrane trafficking [BR:ccav04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    112508856
 Others
  Specific organelles associated proteins
   Auto phagosome
    112508856
Mitochondrial biogenesis [BR:ccav03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    112508856
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_EML_2 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_SCAP ATG16 ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_SPT8 NBCH_WD40 Beta-prop_NWD2_C Beta-prop_IFT122_1st WDR54 Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_VPS8 Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Beta-prop_Nup120_160 WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_Vps41 Cytochrom_D1 Beta-prop_IP5PC_F Beta-prop_RIG_1st VPS8_N B-prop_COPA_B_2nd PQQ_2 CCDC93_CC
Other DBs
NCBI-GeneID: 112508856
NCBI-ProteinID: XP_024969426
LinkDB
Position
LG 3:complement(34639257..34648836)
AA seq 510 aa
MAGDEIAIKAIKHAMRALRKRHLEEEGAHAPAFTAISKPIASQGMVWKDKAETLESELQQ
CYKAQARLSEQLVVEVAESRASKALVQEKEALIPSLENKLSQVRDECSRLTAVLEEKTKA
LELLIGENQELRAQYEEMRARANNAEAENKTLVDRWNLQKMEDSKRLNEATALYEDLLSK
IKASGLEQLARQQIDGVARRSEEGAEYYVESIIPKICKHRIVAHEGGCASIIFDNSSGKL
ISGGQDQTVKIWDTNTGLLTRTYHGCLGSVLDLAITDDNRCVIAASSSNNLYVWDANSGR
VRHTLTGHLDKVCAVDVSRLSSRHVVSSSYDRTIKLWDLNKGYCINTIIFPSNCNALSFS
ADGETIFSGHVDGHLRLWDIQTGNLLSEIAAHSLAVTSICLSRNGNRILTSGRDNLHNLF
DIRSLEVCGRLGASGNRVSSNWSRSCISPDDNYVAAGSADGCVHVWSISEANIVSTLKEH
TASVLCCSWSGLGKPLATSGRNGIICMWSH
NT seq 1533 nt   +upstreamnt  +downstreamnt
atggctggggatgagattgccataaaagcaataaagcatgccatgagagcccttaggaag
cggcatttggaggaggagggagctcatgctcccgcttttacagcaatttctaaacctatt
gcttctcagggtatggtgtggaaggataaagcagaaactcttgaatcagagcttcagcaa
tgttataaagctcaagctcgactatctgagcagcttgttgtagaagttgcggagtccaga
gcttcaaaagctttagttcaggagaaagaagccttgattcctagtcttgaaaataagctt
tctcaagtaagggatgagtgttctcgtttgactgcggttttggaagaaaagactaaagcc
ctagagttgcttatcggtgagaatcaggagctcagagctcaatatgaagaaatgagagct
agagccaacaatgccgaggctgaaaacaagacattagtcgatcggtggaatttgcagaaa
atggaggattctaaacgccttaatgaggctactgctctatatgaagatttgcttagtaag
atcaaggctagtggtctggagcaactcgccagacagcaaattgatggtgtggcccgtcgt
agcgaagaaggtgctgaatactatgtagaatcaattatacctaaaatatgtaagcacagg
atcgtagctcatgaaggtggctgtgcatccataattttcgacaacagttctggaaaattg
atcagtggtgggcaagaccagactgtcaaaatttgggacacaaataccgggttgctaact
cgaacctaccatggttgtttaggctcggttcttgatcttgccatcactgatgataataga
tgtgtaattgctgcaagtagctcaaataacctgtatgtatgggatgcaaattccggacgg
gtccgccataccctcaccggccatttagataaagtatgtgcggtagacgtgagcaggttg
tcgagccgccatgttgtgagttcatcttacgaccgcactatcaaattatgggatctgaac
aaaggttactgcatcaacactattatattcccgagtaactgcaatgcgctttctttcagt
gcagatggcgagaccattttttcaggccatgttgacggacacctgaggttatgggatata
cagacggggaacctactgagtgagattgctgcacattctcttgctgttacgtctatttgt
ctgtctagaaatggcaatagaatactgactagcgggagggataatttgcacaatttgttc
gatataaggagtcttgaagtttgtgggaggctaggagcaagtgggaacagagtttcgtct
aattggagcagatcgtgtattagtccagatgataattatgttgctgctggatctgccgat
gggtgtgttcatgtgtggtcgatatctgaagctaacatagtgagcacactgaaggaacac
acagcttcagtactatgttgttcttggagtggtcttggaaaacccctagccacctcgggc
aggaacggaatcatctgtatgtggagtcattga

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