Cynara cardunculus var. scolymus (artichoke): 112508890
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Entry
112508890 CDS
T05604
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03013
Nucleocytoplasmic transport
ccav03015
mRNA surveillance pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112508890
09122 Translation
03013 Nucleocytoplasmic transport
112508890
03015 mRNA surveillance pathway
112508890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112508890
03041 Spliceosome [BR:
ccav03041
]
112508890
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112508890
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112508890
Spliceosome [BR:
ccav03041
]
Complex C
Other components
EJC/TREX
112508890
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112508890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
112508890
NCBI-ProteinID:
XP_024969484
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All DBs
Position
LG 3:37622396..37628404
Genome browser
AA seq
428 aa
AA seq
DB search
MGEVKDNDAYEEELLDYEEEDEKALDSVNGKLGSETGKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICNEFERFSRYLPDLKVAVFYGGVNIKIHKELLKNECPHIVVGTPGRILG
LARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLGEMEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGLKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggggaagtaaaggataatgatgcttacgaggaggagcttctcgattacgaagaggaa
gatgaaaaggccctcgactccgtcaatggaaagcttggttccgagaccggcaaaaagggc
tatgttggaattcacagttctggattccgagacttcttgctgaaaccagagcttcttcga
gcaattgtggattctggatttgaacatccttcagaagtgcaacatgagtgcataccacag
gctatcttaggaatggatgtcatttgtcaagcaaagtctgggatggggaaaactgctgtg
tttgttctgtctactctacaacagatcgagcctgtggcaggtcaggttgctgcccttgtg
ctttgccacaccagagaattagcttatcagatctgcaatgagtttgaaaggttcagtagg
tacttgcctgatctcaaggttgctgtcttctacggaggtgtcaacataaagatccataag
gaactactgaagaatgaatgtcctcatattgttgttggaacacctggaagaatattgggg
cttgctagggataaagatcttggattgaagaatgtgaggcattttatccttgatgagtgt
gacaaaatgttggagtcacttgacatgagaagggatgtgcaggagatttttaagatgaca
cctcatgacaagcaagtaatgatgttctctgcaacattaagcaaggaaattcgaccggtt
tgcaagaagtttatgcaagatccaatggaaatttatgttgatgatgaagccaagttaaca
cttcatgggcttgtccagcattacataaaattgggtgagatggagaagaatcgcaagctc
aatgaccttctagatgccttggactttaaccaagtagtcatttttgtcaagagtgtcagc
agagctgctgagcttaataaattacttgtggagtgcaactttccatctatatgcatccat
tctggaatgtctcaggaagaaaggttgacacgctacaaagggttcaaggagggtcttaaa
agaatccttgttgcaactgatttagttggaagaggcatagacattgagcgtgttaatatt
gtcataaattatgacatgccagattctgccgacacatatctgcacagggtgggaagagct
ggcagatttggcaccaagggtcttgcaatcactttcgtatcatctgcttcagactctgat
gttcttaatcaggtccaggaaaggtttgaggtagacataaaggagctcccagagcaaatt
gatacttctacatacatgccatcataa
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