KEGG   Cynara cardunculus var. scolymus (artichoke): 112508900
Entry
112508900         CDS       T05604                                 
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog isoform X1
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ccav03400]
    112508900
DNA repair and recombination proteins [BR:ccav03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     112508900
SSDB
Motif
Pfam: MMS19_N MMS19_C HEAT_2 HEAT_EZ Cnd1
Other DBs
NCBI-GeneID: 112508900
NCBI-ProteinID: XP_024969499
LinkDB
Position
LG 3:38728594..38744630
AA seq 1137 aa
MADSTTTNCVKHIETYVDSSSSKSPAQQDASLDAIAKLLLNDIITLESLVREMEMYLTTT
DNIIRARGILLLAELLTRISSKPLDNTTIHSLIGFFAEKLSDWRALRGALVGCLALMRRK
GDTGAISSGDANGVAQSFMQNLQVQSLGQHDRKLCFEILECLIDCYPDTVMTMEDDFVYV
ICEAIDGEKDPQCLLLTFHLVEMLAQLYPDSSSSLASYAEDLFNILGSYFPIHFTHPKGE
DDVKREELSRALMLAFGSTALFEPFAVPLLLEKLSSSLPSAKVESLKYLSYCTVKYGAHR
MLEHLEALWSSLKDAVFTSGPSMLTVGSYLESYVGYQDNKIVAEALILLQKLIQQDNGVF
LDLVLKDMDINMMLTSLLDNKNYDDITVPDKQRLNAVGRILYVSAAASIASCNAIFQSFF
SSLVNGLGSTMQNPLGQEKDYVSEKPKFGYLYICVELLAACRTLVVGYDEPTSITYLANE
TWCSILHSFCSSLTSSLIKSLKEINQDDFNHTGVRGLQILASFPGSFLPVSKSTFENILV
EFMSIIVLNFNNTSLWRYVLKALVEIGSFIEKSHDSEKMPSFDVIVVERMVVLLSYDDST
MPLSLKVEAVSEIGRTSLKYMLKIVQELNKAISTSLHGSWLDGNSKPAEHAMLLLECYAD
KVLPWFQNVRDSDDVPMHFALKIWDEIEDSTRFVEGVKEKELLETTMNAMKHAVASCSED
SQSILLDKAFSILSSSTTFRVEEGLQLAEFSCRDKWIISLFDSVIIALHPKTHLKNTEGI
LQILMRSLPNGHVPSAHALGSLFNKMPLKENRFADMQYCSLEEAMDIIFNSYIWKSCDTS
HPIRFVDDDDDGNEIGVSNLRLSNVNNGFVRVHAILGLAWMGKGLLMRGHEKVKDVIKFL
LNCLVSNGHLPTSNGDSPEDCKDQETTHLMRAAADSFSIIMSDSEACLNKRLHATIRPLY
KQRLFNMVMPILLSSVVKSDSPITRSMLHRALAHVISNSPLSAILGEANKLIPLLLDGLT
ILSEDVQNRDIVYNLLLVLSGILTAKNGREAIMENTHIIIRCLNKLVFYPHMMLVRETAI
QCLTAMSELPHPRVYPFRLEVLQALTKALDDPKRSVRQEAVKCRQAWASSSSRSLHI
NT seq 3414 nt   +upstreamnt  +downstreamnt
atggctgattcaactacaactaactgtgttaagcatatcgaaacgtatgtcgattcatcg
tcgtctaaatctcctgctcagcaggatgcaagtttagatgcaattgcaaagctcttgctg
aatgatatcataactctggaatcactggtaagagaaatggagatgtatttaactactacc
gacaacatcattcgtgccagaggtatccttcttcttgcagagttgttgactcgcatttca
tcaaagcctttagacaatacaacaatacatagtttgattggcttttttgcagaaaaactg
tcagattggcgagcattgcgcggtgcacttgttggttgcttggctttaatgaggaggaaa
ggtgacactggtgcaatcagcagtggtgatgcaaatggagttgctcagtcgttcatgcaa
aatctacaagttcaatctttaggacagcatgacaggaagctttgctttgagattctagaa
tgccttatagattgttatccagacacagtaatgaccatggaggatgactttgtttatgtg
atctgtgaagccatagatggggaaaaggatccgcaatgcttattgctcacgttccatctt
gtggaaatgctggcacagttatatcctgattcatctagttcactagcaagctatgctgag
gatctttttaacatcttgggatcttatttccctatccactttacacatccaaagggcgaa
gatgatgtgaagagggaggagctctccagggcactaatgctggcttttggatctacggcc
ctctttgagccgtttgctgtgccgttgcttctcgagaaactttcttcatctcttccatcg
gcaaaggttgaatctttgaagtatcttagttattgcacagttaagtatggtgcacaccga
atgctagaacatcttgaagctctttggtcatcattaaaagacgcagtttttacttccgga
ccatctatgttgaccgtgggttcatatttagagagctatgtaggataccaggataacaaa
attgtagccgaagctctcattcttctgcagaagcttattcagcaagataatggcgtattt
ctagatttggttctgaaggacatggacattaacatgatgttgacgtctctcctggataat
aagaattatgatgatattacagtaccagacaagcaaagattaaatgcagttggtcggatt
ctatatgtttcagccgcagcctccattgcttcttgtaatgcaatatttcaaagttttttc
tccagcttagtaaatggtttgggatcaacgatgcaaaatccactggggcaagagaaagat
tatgtttctgaaaaacctaagtttgggtacctctatatttgtgttgagttacttgctgcc
tgcagaactttggttgtgggctatgatgaacctacctcaataacttatcttgccaatgag
acatggtgcagcatacttcatagcttttgtagttcattgacttcttccctcataaaaagt
ttgaaagaaatcaatcaggatgacttcaatcacactggggttaggggattgcagattttg
gcttcattccctggaagtttcttgccggtatcaaaatccacatttgagaatatcttggtt
gaatttatgtcaattatcgtcctcaatttcaacaatacatctctttggagatatgtatta
aaggcattagttgaaattggctcatttattgaaaaatctcatgattctgagaaaatgcca
agctttgatgttattgttgtagagaggatggtggttttgttgtcttatgatgattctact
atgcctttgtcactcaaagtggaagcagtatctgaaattggcaggactagtctgaaatat
atgctgaagattgtccaagaattgaacaaggctatctctaccagtttacacggatcttgg
cttgatggaaactcaaagccagctgaacatgcaatgctccttttggaatgctatgcagac
aaggtgcttccatggtttcagaatgtcagagattctgatgacgtgcctatgcatttcgca
ttaaagatttgggatgaaatagaagatagcacgcgttttgttgaaggcgtcaaggaaaaa
gaacttcttgaaactacaatgaatgcaatgaaacatgctgtggcaagctgttcagaggac
agtcagagcatacttcttgataaagccttcagcatactttcttcaagcacgacttttcga
gtcgaggaaggcttgcaacttgctgaattctcttgtagagacaagtggattatctcatta
tttgattcagtaataatagctcttcatccgaaaacacacttgaagaacaccgaaggaata
ttgcaaatactcatgagatctctccccaatggtcatgttccatcagctcatgctttggga
tctttgtttaacaagatgcccttgaaagaaaacaggtttgctgatatgcaatattgtagc
ttggaagaagcaatggatattatattcaacagttacatatggaaatcatgtgataccagt
cacccaattagatttgttgatgatgatgatgatggcaacgagataggggtgagtaattta
agactaagcaatgtaaataatggatttgtccgcgtccatgctattcttggattagcatgg
atgggaaaaggattacttatgcggggccatgaaaaggtgaaagatgtgatcaagtttttg
ctgaattgcttggtttcaaatggacatttgccaacctcaaatggagattcacctgaagat
tgtaaagatcaggaaacaactcacctgatgagagctgctgcagattcatttagtattata
atgagtgattccgaggcttgtttgaacaaaagattacatgcaaccataagaccactgtat
aagcaacgacttttcaatatggtgatgccgatcttactatcatcagtagtgaaatcagat
tcaccaatcacgagatccatgctgcatcgggcccttgcacatgtcatttctaattctcca
ctgagtgctattctgggtgaagccaataagctcatcccattactgctagatggtttaacg
atcctgagtgaagatgttcaaaatcgagacattgtatataacctgctccttgttttatca
ggaatattgactgctaaaaatggtcgggaagccattatggaaaatacacatatcatcatc
aggtgcctcaacaagcttgtcttctacccgcacatgatgctggtacgtgagacagcaatc
cagtgtttgactgccatgtccgagctgccccaccctagggtatatcctttcaggctggag
gtgctacaagcattaacaaaagcacttgatgatccaaagagaagtgtccgtcaagaagct
gtcaaatgtcggcaagcatgggcctcaagctcatctagaagtcttcatatttga

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