Cynara cardunculus var. scolymus (artichoke): 112508917
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Entry
112508917 CDS
T05604
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
KO
K10752
histone-binding protein RBBP4
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03082
ATP-dependent chromatin remodeling
ccav03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112508917
03083 Polycomb repressive complex
112508917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccav03036
]
112508917
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
112508917
Histone modification proteins
HAT complexes
HATB complex
112508917
HDAC complexes
Sin3A-HDAC complex
112508917
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
112508917
PRC2.2
112508917
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
112508917
Heterochromatin formation proteins
Other heterochromatin formation proteins
112508917
Chromatin remodeling factors
NuRD complex
112508917
NuRF complex
112508917
NuRF complex (fruit fly)
112508917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
CAF1C_H4-bd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_HPS5
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_2nd
eIF2A
Beta-prop_SPT8
WD40_RFWD3
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
112508917
NCBI-ProteinID:
XP_024969536
LinkDB
All DBs
Position
LG 3:complement(39164249..39173832)
Genome browser
AA seq
460 aa
AA seq
DB search
MKERGGKGGGQPSVNERYTQWKSLVPILYDWLANHNLVWPSLSCRWGPLLEQATYKNRQR
LYLSEQTDGSVPNTLVIANCEIVKPRVAAAEHIAQFNEEARSPFVKKFKTIIHPGEVNRI
RELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGATESRPDLILTGHQEDAEFALAMCQ
SEPFVLSGGKDKSVVLWSIHDHISTLATDSGATKSPGSNGGKSPKADEKPTESPKIQARG
IFQGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARTGSSPVVKVEKAHNADLHCVDWN
PIDENFILTGSADNTVRLFDRRNLTSNGVGSPVHIFTNHNAAVLCVQWSPDKSSIFGSSA
EDGVLNIWDHNKIGERSGPASKFAPGLLFRHSGHRDKVVDFHWNSHDPWTIVSVSDDGES
TGGGGTLQIWRMIDLIHRPQEEVINELEKFKSHILTCSSP
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaagaggcgggaaaggaggaggtcagccgtcggtgaacgaacgatacacacag
tggaagtctctcgttcccattctctacgattggctcgctaatcacaatctcgtttggcct
tctctttcttgccgatgggggccgctactagagcaagctacatacaagaatcgccagcga
ctctacctctcagaacagaccgatggtagcgttccaaacacgctcgtgatagcaaattgt
gaaattgttaaaccaagagttgcagctgctgaacatatagcacagtttaatgaagaagca
cgatctccctttgtaaagaagtttaaaaccattatccatcctggagaggtaaatcggatc
agggagcttcctcagaacagcaaaatagtagccacacacacagacagtcccgatgttctt
atctgggatgttgaagctcagcccaatcgccatgctgtcctgggagccacagagtcccgt
cctgatctgatcttgaccggtcatcaagaagatgcagaatttgctcttgctatgtgccaa
agcgaaccctttgtactctctggaggcaaggacaagtctgttgtgttgtggagtattcat
gatcacatctccactttggcaacggattccggagcaacgaaatctccgggatctaatggc
ggtaaaagcccgaaggctgatgagaaacctactgagagccctaaaattcaagcaagaggt
atcttccaagggcatgaagatactgtggaggatgttcagttctgcccttctagtgcacaa
gaattctgtagtgttggtgacgactcttgtcttattctatgggatgcgagaaccgggtct
tctccggttgtcaaggtcgagaaagcgcataatgctgatctccattgtgttgattggaac
ccgattgatgaaaatttcattttaacagggtccgctgataacactgttcgtttgtttgat
cgtcgaaatcttacttctaatggcgttggatcacccgtgcacatatttacaaaccacaac
gccgctgtcctttgtgtacagtggtctccagacaaatcgtccatctttggaagttcggct
gaggatggtgtcttgaacatctgggatcacaataagattggtgaacgctctggtcctgcc
tcgaaatttgcaccaggcttattgttccgtcactctgggcaccgggataaggtggttgat
tttcactggaactcacacgatccatggacgattgtgagtgtatccgacgatggtgaaagc
accggtggtggtggaacgctacagatatggaggatgatcgatttgattcatagaccacaa
gaggaagtcatcaacgagctcgagaaattcaaatctcacatcctaacttgttcatctccg
tag
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