Cynara cardunculus var. scolymus (artichoke): 112509153
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Entry
112509153 CDS
T05604
Name
(RefSeq) exopolygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav00040
Pentose and glucuronate interconversions
ccav01100
Metabolic pathways
Module
ccav_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112509153
Enzymes [BR:
ccav01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
112509153
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Gene cluster
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
112509153
NCBI-ProteinID:
XP_024969779
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Position
LG 3:complement(31654180..31655832)
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AA seq
396 aa
AA seq
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MVSFFPWLPLLLSLAAAAHNHKPPFPNTFNVLSYGALPIPVTDNSKAFLRAWKDACECEG
GGRVWIPRGTYLLGSVVFIGPCKGPVEFVIKGSLVASSDRSKLFVDHWIGFLYVDRLVVR
GGGHLLGQGGAAWRYNDCATNPRCRPLPVTMRFDFVTNSKISRIRSIDSKNAHFNLFACQ
NVNMSRIQIDAPAWSPNTDGIRIGASSNITIENSIISTGDDCVSMIAGSEDIMISGVHCG
PGHGFSIGSLGGSDNEEHVSRIIIRNSTLRETQNGLRIKTWAPSPPSLASDITFEDIVME
NVNNPIFIDQQYCPQPPCNEKAQSNVQIRNVTFQKVHGTSSSKVAVKIQCSKHVPCEDVK
LVNINLEYRGSEGPAASSCFNVKGKSYGLQLPSGCL
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggtctccttcttcccatggcttccattgctgctctctctcgccgctgctgctcacaat
cacaaacctccatttccaaacaccttcaatgtgttgtcttatggtgcacttccaattccg
gtcaccgataactcgaaggcgtttcttcgagcatggaaagatgcatgtgaatgtgaggga
ggtggtagggtttggatcccgagaggaacgtatcttcttggctccgtcgtcttcatcgga
ccgtgcaagggacctgtagaatttgttattaaaggatcgctagtagcttccagtgatcgc
tccaagttgtttgtcgatcactggattggtttcttgtacgtcgaccggttggtggtgaga
ggtggtggtcatctgcttggtcaaggtggcgctgcgtggcggtacaacgactgcgccacc
aatccccgttgcagacctcttcccgtcacgatgcggtttgattttgttacgaattcgaag
ataagccggatccgatcgatcgacagcaaaaacgctcatttcaatctatttgcgtgccaa
aacgtgaacatgagccgcattcagatagatgccccggcatggagcccaaataccgatggc
attcgtataggggcctcgagcaacatcactatcgaaaacagtataataagcaccggtgac
gattgcgtttcgatgattgcgggtagcgaggacattatgatctcaggcgtccattgtggg
cctgggcatggttttagcattggtagccttggtgggtccgacaatgaagaacatgtgtct
cgtataattatacgaaattcgacattacgagagactcaaaacggcttgaggatcaaaaca
tgggctccctcaccgcctagcttggcttcggatattacattcgaggacatcgttatggaa
aacgtcaataaccccatttttatcgaccaacaatactgcccacaacctccttgcaacgaa
aaggctcagtcaaacgttcaaataaggaatgttacattccaaaaagtacatgggacatcg
agttctaaggttgctgttaaaatacagtgtagtaaacacgtgccttgtgaagatgttaaa
ctcgtgaatattaacttagagtaccgtggatcggagggacccgctgcttcatcttgcttc
aacgttaaaggaaagtcgtacggcctacaacttccgtcggggtgtctatag
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