KEGG   Cynara cardunculus var. scolymus (artichoke): 112509193
Entry
112509193         CDS       T05604                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ccav03009]
    112509193
Ribosome biogenesis [BR:ccav03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    112509193
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WDR55 EIF3I Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_EML WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_RIG_2nd WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_Vps41 ANAPC4_WD40 Beta-prop_HPS5 Beta-prop_IP5PC_F Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_VPS8 WDR54 VPS8_N PEP5_VPS11_N PROPPIN Beta-prop_LRRK2 Beta-prop_NWD2_C
Other DBs
NCBI-GeneID: 112509193
NCBI-ProteinID: XP_024969816
LinkDB
Position
LG 3:complement(35194733..35199639)
AA seq 458 aa
MKEALVVCGGKNLAVGVTIWDMETGDHLLHIPTCASPFHGLTCLRHQYLVASQIQPRGSV
SGGVIFTWPFSKPRAPLRSYPLEAIGPLSSSKDGIYLAGGATSGNVYVWEVINGKLLKTW
HAHNSPLTCLAFSDDASLLISGSEDGMIVVWPMIRLLDETDSGSSHTSLSVSTDHESFIT
GLLPSSNASHSVFVSSSLDGTCKVWDLVKGTLLQTCSFPQPITASVLDPAERFLFSGSAD
GRIFMSPFDVGLMKEPAMHSKDKKVELNGHKESITALTFSRSGLISASEDFTACLWDVVK
GVIIRRFNHRKGFITNLVVIPYSSLLPSRNHQRKSTHLPVSLLKKCSWQDDPSKGTVTLL
PSPGEQQITHQYQSANLLNQQILDLELLTATMLLRFEQVGRTPEAIQLKVETNIESRLLI
SNMTKHVMEMNNHLQSRLLDLTRHRISQHETEAERNKL
NT seq 1377 nt   +upstreamnt  +downstreamnt
atgaaagaagcattggtagtgtgcgggggcaagaatttagcggtgggggtgacgatttgg
gacatggaaacaggggatcatcttcttcatatacccacatgtgcttcaccgttccatgga
ctcacttgtttgaggcatcagtacttggttgcctctcaaattcaaccccgtggctccgtc
agcggcggcgttatctttacctggcctttctccaagcctcgtgcacctttacgaagctat
ccacttgaagccattgggccgctttccagctcaaaagatggcatatatttagccggtgga
gccacttctggaaatgtctatgtttgggaggtaataaatgggaaactgctcaagacttgg
catgcacataactcgccattaacttgtttggcattttctgatgatgcttctcttctgata
tctggttctgaagatggaatgatagttgtctggccaatgataagattactggatgagaca
gactcaggatcctctcatacatcactaagcgtttcaactgaccatgaatcctttataact
ggactcttaccgtcctcaaatgcctctcactcggtttttgtatcgagctctcttgatggc
acatgcaaggtatgggacctcgtaaaggggactcttttgcaaacttgctcttttccgcaa
ccaataactgcgtcggtccttgaccctgcagagagatttctgttctctggaagtgcagat
ggaaggatattcatgagcccgtttgatgttggattgatgaaggaacctgctatgcattcg
aaggataaaaaagttgaattgaatggacacaaggaatccattacggcattgaccttcagt
agatccggccttatttctgcctcggaggattttactgcctgcttgtgggatgttgtcaaa
ggtgtgatcattcgaagatttaaccatcgaaagggttttattaccaatctggttgtgatc
ccgtactcctcgttgcttccctcgaggaatcatcaacgaaaatctactcatttgcctgta
tcattgctgaagaaatgttcttggcaggatgatccatcaaaaggaactgttacccttcta
ccatcacctggagaacaacaaatcacccatcaatatcaaagtgctaatttgctcaaccag
caaattcttgatttggagttgttaacagcaaccatgttattgcgatttgagcaggtggga
aggacacctgaagccatacagttgaaagtcgaaacaaacattgagagtagattgttgatt
agtaacatgacaaagcatgtgatggagatgaacaatcacttacaatcacgcttgctcgat
ttaactcggcatcgaatttcacaacatgaaactgaggcagaaagaaacaagctctag

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