Cynara cardunculus var. scolymus (artichoke): 112509300
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Entry
112509300 CDS
T05604
Name
(RefSeq) uncharacterized protein LOC112509300 isoform X1
KO
K17925
sorting nexin-13
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ccav04990
]
112509300
Domain-containing proteins not elsewhere classified [BR:
ccav04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
112509300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PXA
Nexin_C
PX
eIF-3c_N
Motif
Other DBs
NCBI-GeneID:
112509300
NCBI-ProteinID:
XP_024969945
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All DBs
Position
LG 3:complement(38163578..38177359)
Genome browser
AA seq
1098 aa
AA seq
DB search
MSTGRQTVTARDLIDEAKKRIVFLFMCVVGLSYLMSLTSASVLVNLPAALLLIVMLRYFA
LDYDLRRKTASYSRIPSSAHTFSQKKQSVEPTFLSGKSEWRKKVNSPVVEDAIDQFTRHI
VSEWVTDLWYSRVTPDKQGPDELVLIINGVLGEFSSRMRNINLIDLLTRDIIKLLCTHLE
LFRACQMKIMNQQSLTISQRDIELKAVLYAENKLHPALFSAGAEYKVLQHLMDGFISLTF
RPEDLQCSLFRYIVREMLACAVIRPVMNLANPRFINERIENLVNSARKTNKGANTEEVNS
QSEPKGSPKLSSQPSMVLDPSVKGVELTLLKKENSDSTIDKVADNLHAKDPLLSMDTRST
YSLSSFPSDTGTSKHHSGGERGDKLDIISRRKTEALAPENFENMWAKGRNYKAKESVNRV
AESLRQNSSAKSSNSVNHSKTLPSHPQKYNRPWPSLGTSYEEDEDEDEDEEESRSSRDYS
TEDEENSNITGLNSPGTKVWDGKSNRNHSVTHIHHPLESFEGQKMRKTGKGFSKPEGSPK
GHPGRKRSRVSNQKEEVWHEVERKTFLLGDGQDVLSSSKGHSRSGDSSGDSDGESLGRTY
SGISASSSLPSITIPESINSSVIKSQKSLPLDDSFFRLRCEVLGANIVKCGSKTFAVYPI
SVTDVNNVSWSIKRRFRHFEELHRRLKEYAEYNLHLPPKHFLSTGLDVPVIQERCKLLDI
YLKRLMQLPTISGSIEVWDFLSVDSQTYSFSNSISIIETLSVHSATTVREKSSGVGNDVR
FVGDPLSSKRELSDAVMKNSSSEIKHNYVIDGSRGSKNVVLSLGKPTKELGKPSEDSDSD
SEIGVRSKLYMAGKPEQTLKGLEDSNLHAPSGMLIDDDDDDSVLPEEWVPPNLSVPILDL
VDVVFQLQDGGWIRRKAFWVAKQVLQLGMSDAFDDWLIAKVQLLRRGSNVASGIKRLEQI
LWPDGIFITKHPKRQQPPTASSKVAAAQVSPPPSPRYPPSDEETLTWEEIREQEAKQRSK
LVYELMIDKAPAAVVGLFGRKEYEQCAKDVYYFIQSSVCLKQLAFDLLELLLMSAFPELD
FVFQQLQDEKHKFGVLEQ
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgagcactggcaggcaaacggtgacggctcgagaccttatcgatgaagccaagaaacgg
atcgtttttctgttcatgtgcgttgttggactctcgtatctcatgtccttgacaagcgcc
tcggtgttggtaaacttgcctgctgcgcttctcttaatcgttatgcttcgttattttgct
ttggattatgacctgcggaggaaaaccgcatcatatagcagaattccatcctcagcccac
actttttctcaaaagaagcagtctgtggagcctacatttctctcaggaaagtctgagtgg
agaaagaaagtaaattctcctgttgttgaggatgcaatagatcagtttaccagacatata
gtttccgagtgggtcactgatctctggtactcccgcgtaacccccgacaaacaaggtccg
gatgagttggtgctgatcattaatggtgtgcttggggagttctctagccgcatgagaaat
atcaaccttatcgaccttctgacaagggacatcatcaaacttttatgcacccacttggaa
cttttccgtgcatgtcagatgaagattatgaaccagcagtctctgacaatttcacaacga
gatatagaactcaaagcggtgctttatgctgagaataagttgcaccctgctttattttct
gctggagctgagtacaaggttctacaacatcttatggatggtttcatctctttaacgttc
aggcctgaggatctacaatgctctttatttcgctatatagtcagggaaatgcttgcttgt
gcagtaataagacctgttatgaatttagccaacccgaggttcattaatgaaaggattgaa
aacctggtaaattcagcaagaaagaccaataaaggagctaacacagaagaagtgaactca
cagtccgagccaaagggatctccaaaactctctagtcaaccgtctatggtgctagatcct
tctgtaaagggtgttgaactcacactgttaaagaaagagaattctgattccaccatagac
aaagttgcagacaatcttcatgcaaaagatccgttgctttcaatggatacaagatctact
tattccttgagttctttcccgtcagacactggaaccagcaaacaccactctggaggagaa
aggggtgacaaattagacataatttctcgtagaaaaaccgaagctttggctcctgagaat
tttgagaatatgtgggcaaaaggtagaaactacaaagcaaaagaaagcgtgaaccgtgtt
gcagagtctctccgtcaaaattcttcagccaagtcatcaaattcggtcaatcactcgaag
acattgccttcgcacccgcagaaatataaccgaccatggccttctttgggcacttcttat
gaagaagatgaggatgaggatgaagatgaggaggaatcaagaagcagccgagattattct
acggaagatgaagaaaacagtaacattacgggtttaaattctccgggaactaaagtctgg
gatggtaaaagtaataggaatcactccgttactcacattcatcacccacttgaaagtttc
gaaggccagaagatgaggaaaactgggaaaggtttttcaaagcccgaaggttcaccaaaa
ggacatccgggtagaaaaagatcaagagtaagcaatcagaaggaggaagtgtggcatgaa
gttgaaagaaagacctttctactgggagatgggcaagatgttttgagttcttccaaaggg
cattcgagatcaggtgattctagtggtgattctgatggagagtcattgggaagaacgtat
agcggaataagtgcttcatcttctctcccttcgattactattcctgaaagtatcaacagt
tcagtcattaagtcccaaaaaagtttaccgttggatgattcgttttttagactaagatgt
gaggtgttgggtgccaatattgtgaagtgtggctctaagactttcgctgtttatcccatc
tctgttacggatgtgaataatgttagctggtctatcaaacgaaggtttcgacattttgag
gagttacatcggcgtcttaaggagtatgcagagtataatcttcatctcccaccaaagcat
tttctatcaacgggactcgatgtgcccgtcatccaagaacgttgtaaattgcttgacata
tatttgaagagacttatgcaacttccaactatttctggatctattgaagtttgggacttc
cttagtgttgattctcagacatatagtttctcaaattccatatccataattgaaactctt
tcagttcattcagccacaactgttcgtgaaaagagttcgggggttggtaatgatgttaga
tttgtaggggatcccttgagttctaaaagagaactttcagatgctgtgatgaaaaattct
tcgtcagaaataaaacataattatgtgattgatgggtcaagaggatctaagaacgttgtc
ttatctcttggaaaaccaacaaaggaacttggaaaaccatctgaggattcagatagcgac
tctgaaattggcgttcgaagtaaattatatatggccggaaagccagagcagactttaaag
ggactggaagacagtaatttacatgcaccatctgggatgcttatagatgacgatgatgat
gattcagtactccctgaggagtgggtgccaccaaatttaagcgtcccaatattagatctt
gttgatgttgttttccagcttcaagatggtggttggatcaggaggaaggccttctgggtg
gccaagcaggttctacagctgggcatgtcagatgctttcgatgattggttaattgcgaaa
gtccaactcctacgtaggggctctaatgttgcttcaggaatcaagcggcttgagcagata
ctttggccagatgggatattcataacgaagcacccaaagcgacagcagccgccaaccgcc
tcctcaaaggtggcggctgcccaagtttcacctcctccatcgccacgatatccaccaagt
gatgaggaaacgttgacatgggaagagattcgagaacaggaagccaaacaacgctctaaa
ctagtttacgagctaatgatcgataaggcaccagcggctgttgttggtctttttggtcga
aaggagtatgaacagtgtgcgaaagatgtctattactttattcagtcatctgtatgtcta
aagcaattagcttttgaccttcttgagttgctgttaatgtctgcatttccggaactggat
ttcgtgttccaacagttgcaagacgaaaaacacaagtttggagttcttgaacagtag
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