Cynara cardunculus var. scolymus (artichoke): 112509329
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Entry
112509329 CDS
T05604
Name
(RefSeq) sm-like protein LSM36B
KO
K12625
U6 snRNA-associated Sm-like protein LSm6
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112509329
09123 Folding, sorting and degradation
03018 RNA degradation
112509329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112509329
03041 Spliceosome [BR:
ccav03041
]
112509329
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112509329
mRNA degradation factors
5'-3' decay
Lsm complex
112509329
Spliceosome [BR:
ccav03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
112509329
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
112509329
NCBI-ProteinID:
XP_024970001
LinkDB
All DBs
Position
LG 1
Genome browser
AA seq
97 aa
AA seq
DB search
MSGAGAGAITGEKGSSTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atgagtggagcaggagcaggagccataacaggagagaaagggtcatcaacaaccaaaaca
ccagccgattttctcaaatctattcgtggtagacctgttgttgtcaaattgaattccggt
gtcgattatcgaggtattttggcttgcttggatggatacatgaacatagcaatggaacaa
actgaagaatatgttaacggacagctgaaaaacaaatatggtgatgcatttattcgagga
aacaatgttctttacatcagtacatccaagagaacccttgcagaaggcgcctag
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