Cynara cardunculus var. scolymus (artichoke): 112509343
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Entry
112509343 CDS
T05604
Name
(RefSeq) oligouridylate-binding protein 1B-like
KO
K13201
nucleolysin TIA-1/TIAR
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112509343
03041 Spliceosome [BR:
ccav03041
]
112509343
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
112509343
Spliceosome [BR:
ccav03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
112509343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_PARP14_3
RRM_7
RRM_5
Motif
Other DBs
NCBI-GeneID:
112509343
NCBI-ProteinID:
XP_024970021
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All DBs
Position
LG 3:complement(40272596..40280101)
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AA seq
419 aa
AA seq
DB search
MQHQRLKQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPNTCRSVYVGN
IHTQVTEPLLQEVFASTGPVEGCKLIRKDKSSYGFIHYFDRRSAALAILSLNGRHLFGQP
IKVNWAYASGQREDTSGHYNIFVGDLSPEVTDAMLYACFSVYASCSDARVMWDQKTGGSR
GFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGISDEKQASDSKSVVELTNGS
SEDGKEPTNSDAPENNPQYTTVYVGNLAPEVTQLELHRHFHSLGAGVIEEVRVQRDKGFG
FVRYNNHAEAALAIQMGNTQSILYGKQIKCSWGSKPTPPGTSSNPLPPPVPAPMLSAGEL
LAYERQLAMSKMGLMHPQVMGQHPMKQATMDMVGGGASQAIYDGGFQSVAAAQQLMYYQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcaacatcagagactgaagcagcaacaacagcaagcattgatgcagcaagctcttctt
caacaacaatctctttatcatcctggcctcctggctccaccccagattgaaccaatacca
agtggaaatttgcctcctgggtttgatccaaacacatgccgcagcgtgtatgtagggaat
attcatacacaagtgactgaaccacttctacaagaggtttttgcaagtactggtcctgtt
gaaggctgcaaactcataagaaaagataagtcatcatatggattcattcactactttgat
cggagatctgctgcacttgctatattgtctctaaatggaaggcatttgtttggacagcct
atcaaagttaattgggcatatgccagtggacagagggaggacacatcaggtcactacaac
atatttgtcggtgatcttagccctgaggttactgatgctatgttatatgcatgcttctct
gtctatgccagctgttcggatgcaagggttatgtgggatcagaaaactggaggttcacga
ggttttgggtttgtttcttttcggaatcaacaggatgctcaaagtgctataaatgactta
actgggaagtggcttggaagtaggcagatacgctgcaattgggctacaaaaggtgctgga
attagcgatgaaaaacaagcttcagattcaaaaagcgtggtagagctaacaaatgggtca
tcagaggatggtaaagagcccactaatagcgatgccccggagaataatccacagtataca
actgtttatgttggcaaccttgcaccagaggttacacagcttgagcttcatcgtcacttt
cattcccttggtgcaggggtgattgaggaagttcgggtgcagcgtgataaaggttttggt
tttgttagatacaataaccatgctgaggctgcgcttgctattcaaatgggaaacacccag
tctattctttacggcaaacaaattaagtgctcatggggcagtaagcccactcctccagga
acaagctcgaacccacttccccctccggttcctgcaccaatgctgtcggctggtgaatta
ttggcatacgaacgtcaactagcaatgagcaagatgggtctgatgcatcctcaagttatg
gggcagcatcctatgaaacaagcaaccatggatatggtcgggggcggagcaagtcaggcg
atatatgacggtggtttccagagtgttgccgctgcccaacaactcatgtactatcagtag
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