KEGG   Cynara cardunculus var. scolymus (artichoke): 112509379
Entry
112509379         CDS       T05604                                 
Name
(RefSeq) coatomer subunit alpha-1-like
  KO
K05236  coatomer subunit alpha
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ccav04131]
    112509379
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ccav04147]
    112509379
Membrane trafficking [BR:ccav04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    112509379
Exosome [BR:ccav04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   112509379
  Exosomal proteins of bladder cancer cells
   112509379
SSDB
Motif
Pfam: COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz WDR55 Beta-prop_EML_2 TPR_COPA_B Beta-prop_WDR36-Utp21_1st EIF3I WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_SCAP WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_DCAF4 Beta-prop_WDR41 WD40_RFWD3 Beta-prop_SPT8 Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_At4g14310 Beta-prop_NWD2_C Aa-Ago_N Zn_ribbon_19
Other DBs
NCBI-GeneID: 112509379
NCBI-ProteinID: XP_024970079
LinkDB
Position
LG 3:30284287..30297344
AA seq 1217 aa
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
KSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHESPWIVSSSDDQTIRIW
NWQSRTCISVLTGHNHYVMCALFHPKEDLVVSASLDQTVRVWDIGALRKKSVSPADDILR
LSQMNTDFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDSKAWE
VDTLRGHMNNVSSVLFHSRQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILGCHP
EINLLAAGHDSGMIVFKLERERPAFSVSGDSLYYVKDRFLRFYEYSSQKEAQIIPIRRPG
SASFNQGPRTLSYSPTENAVLICSDVDGGSYELYIVPKDSFSRGDTVQEAKRGIGGSAVF
VARNRFAVLEKSTNQVLVKNLKNEIVKKSALPVVTDAIFYAGTGNLLCRAEDRVVIFDLQ
QRMVLGDLQTSLIRYVVWSNDMENVALLSKHSIIIADKRLVHRCTLHETIRVKSGSWDEN
GVFIYTTLTHIKYCLPNGDCGIIRTLDVPVYITKIIGNTICCLDRDGKNRAVVVDSTEYL
FKLSLLKKRYDHVMSMIRNSELCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNI
QIAVASAKEIDEKDHWYRLGVEALRQGNTGIVEYAYQRTKNFERLSFLYLITGNLDKLSK
MMKIAEVKDDVMGQFHNALYLGDVKERIKILENAGHLPLALATAKTHGLNDIAEGLAAKL
EGDVPSLPSSRSTSLLIPPTPVLCGGDWPLLRVMKGIFEGGLDNVGRGAQEEYEDAADAD
WGDDLDIVDVENIQNGDINMVLEDEEAHEENEEGGWDLEDLELPPDTETLKIATTARTSE
FVAPTPGMPVSQIWVQKSSLAAEHAAAGNFDTAMRLLNRQLGIKNFAPLKSLFIDLHMGS
HTYLRAFSSAPLISLAIERGWSESASPNVRSPPALVFNFSQLEDKLKAGYKATTVGKFTE
ALRLFMGILHTIPLIVVESWREVDEVKELVIIVKEYVLGLQMELKRREFKDNPVRQQELA
AYFTHCNLQLPHLRLALVNAMTVCYKAGNLITASSFARRLLETNPAAENQAQKARSVLQA
AERNMKDSTQLNYDFRNPFVTCGATYVPIYRGQKDVLCPYCSSHFVLSQEGQLCAVCNLA
VVGSDASGLLCSPAQIR
NT seq 3654 nt   +upstreamnt  +downstreamnt
atgttgacgaagttcgagacgaagagtaatagagtgaaagggctgagtttccacagcaag
agaccatggatcttagctagccttcacagtggtgtgatccagctatgggattatagaatg
ggcaccctcatcgatcgattcgacgaacatgatgggcctgttcgtggcgttcattttcac
aaatctcagcctcttttcgtttccggaggagatgattacaagatcaaagtatggaactat
aaactgcatagatgtttgtttacacttcttgggcatcttgattacatccgaacagttcaa
tttcatcatgagtccccctggattgttagctctagtgatgatcaaactatcaggatctgg
aattggcagtctcgtacttgtatatctgtattgacaggacacaaccattatgtaatgtgt
gctttgttccatccgaaggaggaccttgttgtttcagcatcattagatcagactgttagg
gtttgggatattggtgcactgaggaagaaatcagtttcccctgctgatgacatcctccgg
ttgagtcagatgaatacagatttctttggtggggttgacgctgttgtaaagtatgtcttg
gagggccatgatcgaggagtcaattgggcttcgttccatccaactctccctcttattgtc
tcaggagctgatgatcgccaagtaaaaatatggcgaatgaatgattcaaaagcttgggaa
gtagacactttgagaggtcacatgaacaatgtttcatctgttcttttccattcaaggcag
gacatcattgtatcaaactcagaggataaaagtatacgcgtttgggatgctacaaaacga
acaggccttcaaacttttcggcgggagcatgacaggttctggattcttgggtgtcatcct
gagattaaccttctggctgctggccatgatagtggcatgatagttttcaagttggagagg
gaacgcccagctttctctgttagtggggattctctgtactatgtcaaagaccgttttctg
cgcttctatgagtactcaagtcagaaagaagctcaaataataccaatccgtaggccaggt
tctgccagctttaaccaggggcctagaactctttcttatagccctactgagaatgctgtt
ctaatatgttcagatgtagatgggggatcttatgaactctatattgtacctaaagatagc
ttcagtagaggtgatactgtccaagaggcaaaaagaggtattgggggttcagcagttttt
gtggcccgtaatagatttgcagtgcttgagaagagtaccaatcaagtgttagtcaagaac
ttaaaaaatgagatagtgaaaaagagtgctcttccagttgttactgatgctatcttctat
gcgggtacgggtaacttgctatgcagggcagaggatagagtagtcatatttgaccttcag
cagcgaatggttctgggggaccttcaaacttctttgataaggtatgttgtgtggtcaaat
gacatggagaatgttgctttgcttagcaaacattcaataatcattgctgataagagactt
gtccaccgctgcacccttcatgaaacaatccgtgtcaaaagtggatcgtgggatgagaat
ggtgtattcatatacacaaccctaacccacattaagtattgcctacctaatggggactgc
ggaatcataaggacccttgatgttcctgtatacattacaaagataattggaaatacaatc
tgctgcttggaccgagatggcaaaaaccgtgcagtagttgttgactcaactgaatatctc
ttcaagttgtctctgctgaagaagagatatgatcatgttatgagcatgataaggaactca
gagctatgtgggcaagccatgatcgcatatcttcaacaaaaaggttttccagaggttgct
cttcattttgtgaaggatgagagaactcgcttcaatttagccctcgaaagtggaaacatc
cagattgctgttgcctctgctaaagagattgatgaaaaagatcactggtataggttgggt
gtggaggcccttcgtcagggcaacactggtattgttgagtatgcataccagaggacaaag
aactttgagaggctgtccttcttgtatctgatcacaggcaatttagataaattgtccaaa
atgatgaagattgcagaggtaaaagatgatgttatgggtcagtttcacaatgctttgtac
ctaggtgatgttaaagagcgaattaagattttggaaaatgctggtcatcttccgctagca
ttagctacagccaagacccatgggttgaatgatattgctgaaggtcttgctgctaaactt
gaaggtgatgttccttctttgcccagcagtaggtccacttctctattaattcctccaact
cctgtcttgtgtggtggggactggccattactaagggtcatgaaaggaatctttgagggt
ggtcttgacaatgttggacggggtgcacaggaagagtacgaggatgccgcagatgctgat
tggggtgatgatttggatattgtggatgtggagaacattcagaatggagacatcaacatg
gtgctggaggatgaagaagcacatgaagaaaatgaagagggaggttgggatcttgaggat
ctcgaacttcctcctgatactgaaaccctcaaaatagctaccactgcccgcacatcagag
tttgtggccccaactcctggcatgcctgtgagccagatttgggtccaaaaatcatctctt
gctgctgaacatgcagcagcaggaaactttgacaccgcaatgcgcctactgaaccgacag
ctgggaataaagaattttgcacccttgaaatcattatttattgaccttcacatgggcagc
catacttatttgcgtgctttctcatcagctccattgatctccttggccattgagagaggt
tggagtgaatcagcaagccctaatgtccgttcccctcctgcacttgtgttcaatttttct
cagttggaagacaaactcaaggctggttacaaagctaccactgttgggaagtttactgaa
gctttgcggctttttatgggtattctccatacaattcctctgattgtagtcgagtcgtgg
agagaagtggatgaagttaaagaattggttatcattgtaaaagagtatgttctgggtcta
cagatggaacttaaaaggcgagaatttaaggacaaccctgttcgtcagcaggagctggca
gcttactttactcactgtaaccttcagctgcctcacttgagactggccttggtgaatgca
atgactgtatgctacaaagcaggtaatctcatcacagcatcaagctttgccaggcgtctc
ttggagaccaatccagctgctgaaaatcaagcccaaaaagcccgctctgttctgcaggcg
gctgagaggaacatgaaggactccacacagctgaattatgacttcagaaatccatttgta
acttgtggggcaacttatgttcccatttatcggggacagaaggatgtattatgtccatac
tgcagttcacattttgttctctcccaggaaggacagctttgtgctgtttgtaaccttgca
gtggttggatctgatgcatctggtttactctgttctccagcccagatcagatga

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