Cynara cardunculus var. scolymus (artichoke): 112509385
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Entry
112509385 CDS
T05604
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112509385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112509385
03009 Ribosome biogenesis [BR:
ccav03009
]
112509385
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112509385
Spliceosome [BR:
ccav03041
]
Complex A
U1 snRNP components
U1 related factors
112509385
Complex B
112509385
Ribosome biogenesis [BR:
ccav03009
]
Eukaryotic type
Pre-60S particles
Helicases
112509385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
112509385
NCBI-ProteinID:
XP_024970089
LinkDB
All DBs
Position
LG 3:complement(34255008..34260519)
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AA seq
662 aa
AA seq
DB search
MNRYDARVVDAGSYHQRRSDFMGLPPMGPPAVGAGTGGAVPNYVRGGPAPFRGPPTGPPS
SVGGGRGVGSGFPPFEPGVRGGFDVGAGGPVGGRGFGSVRGGRGGGGRMSNGGFDGGRGR
GGRGFGSGRGGSRGGGGRGFDRGSRGGARDGGRGFGSGGRGGGRSFDGGRGGGRGGRGGG
SKGDLDNIALPKQDFGNLVPFEKSFYIESPSVRAMTDQEVALYRGRREITVEGLDVPKPI
RMFHEAGFPDYCLEVISRLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAL
VHVSAQPPLAHGEGPIVLVLAPTRELAVQIQQEAGKFGSHSNIRSTCIYGGAPKGPQIRD
LQRGVEIVIGTPGRLIDMLEARHTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDR
QTLYWSATWPKEVESLARQFLRNPYKVIIGSAVLKANQSINQVIEVVTEVEKYNRLIRLL
KEMMDGSRILIFVETKKGCDQVTRQLRMDGWPALSIHGDKSQDERDWVLAEFKSGRSLIM
TATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGIAITFFTHSNSKHARE
LIKILQEAGQVVPVALSSMTRSMGPGGGSGGNFRSRGRGGFGGNRGMISGSNTIPLGSKT
HW
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgttacgacgccagagttgtggacgccggctcttaccatcagcgtcggagtgat
tttatgggattaccgcctatgggaccccctgccgtgggtgccgggactggtggtgctgtt
cccaactatgtccgcggtggaccggctccattcagaggtccaccaacaggaccgccgtct
tccgtgggcggtggaagaggtgttggaagtgggttccctccttttgaacctggtgttagg
ggaggttttgatgtgggcgctggtgggcctgttggtggcagagggttcggttctgtcagg
ggtggtagaggcggtggtggaaggatgagcaatggaggttttgatggtggtagaggtaga
ggaggtaggggttttggttcaggtcggggtgggagcagaggtggcggtggtaggggtttt
gacagagggtctcggggtggtgcccgtgatggaggtagaggttttggcagtggtggacga
ggtggagggaggagctttgatggtggtcgtggtggtgggaggggaggaagaggtggtggc
tctaaaggggacttggataatatagctctaccaaagcaggattttggcaacttggtacca
tttgagaagagcttctatatcgagtctccttctgtaagggccatgactgaccaagaggtg
gcactttaccgtggccggagagagattactgttgaaggtcttgatgtcccaaagccaatc
cgaatgtttcacgaggcaggttttcctgattattgtctagaggtcatttccagactgggc
tttgttgagccgactccaattcaggcccaagggtggcctatggctttaaagggaagagat
ctaattgggattgctgagactggttctggcaagactttgtcatatttgctgcctgctttg
gttcatgtttcggcacaacctccattggctcatggagaaggacccattgtactagtactg
gcccctactcgagaattggctgtacagatccaacaagaagctggaaagtttgggtcacat
tctaacatacgaagcacttgcatatatggtggtgcacctaagggaccgcagattcgtgat
cttcaaagaggggttgaaattgttattggcacacctggtaggctaatagacatgctagaa
gctcgacacacaaatttgaggagagtgacttaccttgtcttggatgaagctgatcgtatg
ttggatatggggtttgaacctcaaatcaggaaaattatcagccaaatcaggccagataga
caaactctctattggagtgcaacatggcctaaagaggtggagagtttggcgaggcagttc
ttacgcaatccgtataaggtgatcattggatctgctgttctgaaagcgaatcagtctata
aaccaggttattgaagtcgtcacggaggtggaaaagtacaacaggcttatcagactgctc
aaagaaatgatggatggaagcagaatacttatatttgtggaaacaaagaaaggatgtgat
caagtcacaagacaacttagaatggatggatggcctgcattatccatccatggtgataaa
agccaagacgaaagggattgggtcttggcagagtttaaaagtggcaggagtcttataatg
accgccactgatgttgctgcccgtggtcttgatgtgaaggacataaaatgcgtcatcaat
tatgatttcccgtcaagtctcgaagattacgtccacaggataggacgtacggggcgtgca
ggtgccaaggggattgctattacgttcttcacgcattcaaattcgaagcatgctcgagag
ctcattaagatccttcaagaagctggccaagttgttcctgttgcgttatcttcaatgacc
cggtcaatgggtcctggagggggatctggtgggaacttcagatcaagaggtcgaggtggt
tttggtggcaaccgaggaatgatttcagggtccaacaccatccctcttggttcaaaaact
cattggtaa
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