KEGG   Cynara cardunculus var. scolymus (artichoke): 112509423
Entry
112509423         CDS       T05604                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like isoform X1
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    112509423
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccav03021]
    112509423
Enzymes [BR:ccav01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     112509423
Transcription machinery [BR:ccav03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     112509423
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 112509423
NCBI-ProteinID: XP_024970141
LinkDB
Position
LG 3:10417601..10430522
AA seq 1200 aa
MEEAGPSYKEKPSNGAVHVDLDEEYDDDDDMMDAPSIRDFDEVFLKNFCRKASTSFFKHY
GLISHQTNSYNDFIKVGIQNVFDSIGEIIVEPGYDPSKKGDNEWRYASIKFGKVTLERPR
FWTGEKFSTDNGKEYLEFLPRHARLQNMTYSSRMRVQFTKQVYTQELVRSDKFKTGKEKY
LDKKIVETEEREVFIGRIPVMVNSDTCWMSLAEKDDCDYDQGGYFIIKGAEKTFIAQEQL
GLNRVWVAGSPNWRVQYRSVHKRKRVYVKLVDTPKVDDIGGGAQVITVYILSLMDIPIWI
LFFALGVASDKEVVDLIDADIKDGNIVNILIASIHDADQTCDEFRKGWNSLNFVDQLLKK
SKFPPKESVKECIENYLFPNIIGFGRKARYLGYMVKCLLEGYTGRRKVDNKDDFRNKRLE
LAGELLERELKVHLRHAEMRMVKSMQRDLYPDRNLQAMEHYLDAAIITNGLSRAFSTGSW
SHSYKNMEKTSGVVAMLRRANPLQMIADMRRTRQQVLYAGKAGDARYPHPSHWGKICFLS
TPDGENCGLIKNLAGTALVSTTVRERLSDILLSCGMEKLVDDTSTLLSGLDKVFVDGDWV
GICKNSASFVAEFRRRRRRKEVPHQVEIKRDTKHKEVRIFCDAGRVMRPLLVVQNFHKIK
TLKGGGCSFQDLLDNGVVELIGPEEEEDCVTAWDIKYLFLENDGHDPSKYTHCELDMSFM
LGLSCGIIPFANHDHAKRVLFQSQKHSQQAVGYSCTNPDIRLDTLSHQLFYPQRPLFKTV
LSDCLEKPGQPFGQSVKGTIPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNSASLDRGMFR
SEHIRSYKAEVDNKEASGKKNSDDAVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI
GKHTESGSDHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRSPCLGDKFSSMHGQK
GVLGYLESQENFPFTLQGIVPDIVINPHAFPSRQTPGQMLESALGKGIALGGSQRYATPF
SSLSIDAITDQLHRAGFSRWGNERLYDGRTGEIVKSLVFMGPTFYQRLVHMSEDKVKFRN
TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDCSEMHVCQKCK
RMASVIQRSVPGGQKIRGPYCRICDSMEDVIKVNVPYGAKLLTQELFSMGISLKFDTELC
NT seq 3603 nt   +upstreamnt  +downstreamnt
atggaagaggcaggaccgagctacaaggagaagccttcaaatggagcagtacatgtggac
ttagacgaggaatatgatgatgatgatgatatgatggatgcaccttcgattagggatttc
gatgaagtgttcctaaagaacttctgtagaaaggcatcaacatcctttttcaaacattat
ggtcttataagtcatcaaactaactcatataacgatttcatcaaagtaggaattcagaat
gtttttgactccatcggtgagatcattgttgaaccagggtatgatccttcaaagaagggt
gataatgaatggagatacgcatcaataaagttcgggaaggtcactcttgagcgcccaagg
ttttggacaggagagaaattttcaactgataatggtaaagagtacctggagttcttgcct
agacatgcacgtcttcagaatatgacttattcatccagaatgagagttcagttcacaaaa
caggtgtatactcaagagcttgttagaagtgacaagttcaaaactggaaaggagaagtat
ctggacaagaaaatcgtagagaccgaggagcgggaggtgtttatcgggaggattcctgtg
atggtcaattctgacacgtgttggatgagtttagctgaaaaagatgactgtgattatgat
caaggaggctattttataatcaagggagccgagaagaccttcattgcacaagagcagctt
ggattgaatagagtttgggtggcgggttctccaaattggcgtgtgcagtaccgttcggtt
cacaagaggaaaagggtttatgtgaaactggtagacactcctaaagttgacgatattgga
ggaggagcacaagtgataacggtgtatatcttgagtttgatggatataccaatatggata
ctcttttttgcccttggggtagcttcagataaagaagtggttgacctgattgatgccgac
attaaggatggaaatattgtcaatattttaattgcatccattcatgatgctgatcagaca
tgtgatgaatttcgtaaaggatggaattcactaaattttgttgaccaacttctcaaaaaa
agcaaatttccaccgaaagagtctgttaaagagtgcattgagaactacttatttccaaat
atcattggctttggtagaaaagctcggtaccttgggtatatggtcaagtgtcttctggaa
ggttatactggtcgaaggaaagttgataacaaagatgattttaggaacaagaggttggaa
ttggctggtgagctacttgagagagagctaaaagttcatcttcgacatgctgagatgcga
atggtgaagtccatgcaaagggatctctatccggatcgcaatttgcaagcaatggagcat
tatttggatgcagcaattattacaaatggtctttctcgggcattttcgacgggttcctgg
tcacattcatacaaaaacatggagaagacctctggtgttgtggctatgcttaggagggca
aatcctttgcagatgattgccgatatgaggagaacacgtcagcaggtactatatgctggg
aaggctggagatgcaagatacccacacccttctcattggggaaagatttgttttctttct
acccctgatggggagaattgtgggttgataaaaaatttggctggcactgctcttgtgtca
acaactgttcgggaacgactttctgacatactgctaagctgcggaatggaaaaattggta
gatgatacctccactttgctctctggactggataaagtttttgtcgatggcgattgggtt
ggaatttgcaaaaattctgcttcatttgtggctgagtttaggcgccggcgtcgtagaaag
gaagtacctcatcaggttgaaataaaaagagataccaaacataaggaagtgcgcatattt
tgtgatgctggaagggttatgcgtccgcttttggttgttcagaatttccacaaaattaaa
actctaaaagggggaggatgctcatttcaagatcttttagacaatggagttgttgaactg
attggacctgaagaggaagaagattgcgtcacagcatgggacatcaaatatctttttctg
gaaaatgatggacatgacccttcaaagtacacacattgtgaactagatatgtcgttcatg
ttgggtttaagctgtggcattatcccgtttgctaaccacgatcatgccaaaagggtcctc
tttcagtcacaaaagcacagtcagcaagcagtcgggtactcttgcacaaacccggatata
agactcgacactctctctcatcagttgttctacccacagaggccacttttcaagaccgtg
ctttctgactgtcttgaaaaacctggtcagccttttggtcaaagtgtaaagggcacgatt
cctagacctgagttcttcaacggacagtgtgctattgtagctgtcaatgttcatcttggt
tacaaccaagaagattcattggtaatgaacagtgcttccctagaccgtgggatgtttcgg
tcggaacacattcgaagttacaaggctgaagttgataacaaagaagcttcggggaagaag
aactctgacgatgctgtgaactttgggaagatacagagcaagattggacgggttgacagt
cttgatgatgacgggtttccctttattggtgccaacttgcagagtggtgacatagtgatc
gggaaacatacagaatcggggtccgatcatagtataaaactgaagcacactgaaagaggc
atggttcaaaaggttgtcttatcagcaaatgatgaaggaaagaactttgctgtggtatct
ctgagacaggtccggtcaccatgtcttggtgataaattttcgagcatgcatgggcaaaag
ggtgttttgggttatttagaatctcaagaaaacttccctttcactctacaagggatagtt
ccggatattgtcataaacccacatgccttcccctcaagacaaactcctgggcagatgcta
gaatctgcgttgggcaagggaattgccttaggaggttcacaaagatatgcgactcctttt
tcttctctctctattgatgccataacggaccagcttcacagggctggattttcgaggtgg
ggaaatgagaggttatatgatggccggactggtgaaatcgtcaaatcccttgttttcatg
ggccccaccttttaccagaggctggtccacatgtctgaggacaaagtcaagttccgaaac
acaggtcctgtacaccctctcaccagacaaccagtggcagaccggaagcgatttggtggg
atcaagttcggggagatggaacgagactgcctcatagcccatggagcctcggctaatctg
cacgaacgtcttttcactctcagtgactgctccgagatgcatgtctgccaaaagtgcaaa
agaatggcgagcgtgatccagcggtcggtccccggaggccaaaagatccgtggaccctat
tgccggatctgtgactcgatggaagatgtgataaaggtaaatgtgccttatggagccaag
ttactgactcaagagctcttcagtatggggatttctctcaagtttgatactgaattatgt
taa

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