KEGG   Cynara cardunculus var. scolymus (artichoke): 112509621
Entry
112509621         CDS       T05604                                 
Name
(RefSeq) suppressor of mec-8 and unc-52 protein homolog 1 isoform X1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccav03041]
    112509621
Spliceosome [BR:ccav03041]
 Complex B
  Other components
   Complex B specific factors
    112509621
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WDR55 EIF3I WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML LisH_TPL ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_DCAF4 NBCH_WD40 Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_WDR19_1st Beta-prop_Nup120_160 Beta-prop_EIPR1 Beta-prop_NWD2_C Beta-prop_IFT140_1st Beta-prop_Vps41 Ge1_WD40 Beta-prop_NUP159_NUP214 Beta-prop_WDR35_TULP_N Beta-prop_VPS8 Beta-prop_HPS5 DUF7165 Beta-prop_SPT8 Beta-prop_WDR75_2nd VPS8_N Mala_s_1-like Beta-prop_IFT122_2nd PROPPIN WD40_like zf_topless Beta-prop_LRRK2 Beta-prop_IP5PC_F DUF5738
Other DBs
NCBI-GeneID: 112509621
NCBI-ProteinID: XP_024970442
LinkDB
Position
LG 3:complement(1497268..1508740)
AA seq 513 aa
MSALEIEARDVIKIVLQFCKENSLHQTFQTLQNECQVSLNTVDSLETFVADINSGRWDAI
LPQVAQLKLPRKKLEDLYEQIVLEMIELRELDTARAILRQTQAMSVMKQEQPERYLRLEH
LLVRTYFDPHEAYQDSTKEKRRSQISQAIAGEVSVVPPSRLMALIGQALKWQQHQGLLPP
GTQFDLFRGTAAMKQDVDDKYPTTLGHTIKFGKKSHPESARFSPDGQFLVSCSVDGFIEV
WDHISGKLKKDLQYQAEESFMMHDDAVLCIDFSRDSEMLASGSQDGKIKVWRIRNGQCLR
RLENAHSQGVTSVAFSRDGSQLLSTSFDGTARIHGIKNGKLLKEFRGHSSYVNDAIFTSD
GLRVITASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLSPKNPDHVIVCNKTS
SIYLMTLQGQVVKSFSSGKREGGDFVAACISPKGEWIYCVGEDRNLYCFSHQSGKLEHLM
KVHEKDVIGICHHPHRNLVATYGEDCTMKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtctgccctagaaattgaagcacgagatgtgataaaaatagttcttcagttctgcaaa
gagaactctctgcatcaaactttccaaacgttgcaaaatgagtgccaagtatctctgaat
acagtggacagccttgaaacatttgtagctgatattaacagtggtagatgggatgcaata
ttgcctcaagtggcacaacttaagcttccaaggaagaaacttgaagatttatatgagcag
attgttctcgaaatgattgaactccgagagctggataccgctcgtgctatattaaggcaa
actcaggcaatgagtgtcatgaaacaggagcagccagaaagatacttgcgacttgagcat
cttctcgtccgaacttattttgatccccatgaggcttatcaagactcaacaaaagagaaa
cgacgctcacaaatttctcaagctattgccggagaagtctctgtggtcccaccatcacgt
ttaatggctttaattggtcaagctttgaaatggcagcaacaccaagggttacttccacct
ggaacacagtttgatctgtttcgaggaaccgctgcaatgaagcaagatgtagatgataag
tacccaacaactcttggtcacactattaagtttggaaagaaaagtcatcctgaaagtgct
cggttctcaccggacggacaattccttgtttcttgctccgttgacggatttattgaggtt
tgggatcacataagtgggaagcttaagaaggatcttcaataccaagcagaagaatctttt
atgatgcatgatgatgctgttttgtgtatcgattttagtagagattccgagatgcttgct
tctggatcccaagatggaaagattaaagtttggcgtatacggaatggccaatgcttgcgg
cgtcttgaaaacgcgcattctcagggtgtcactagcgttgcattctcccgtgatggaagt
caattgttgagcacatcatttgatggaactgcaagaattcatgggataaagaacgggaag
ttgctaaaggaatttcgtggtcattcttcatatgtgaatgatgccatattcacaagtgat
ggacttcgtgtcattactgcatcaagcgattgtacagtaaaggtgtgggatctgaagtct
acggattgtctacaaacgttcaagccaccacctccattgcggggaggtgatgcatctgta
aattccgttcatctttctcccaaaaatcctgaccatgtaatagtttgcaacaagacatcg
tcaatttacctcatgactcttcaagggcaggttgtgaaaagtttctcctctggtaaaagg
gagggtggagattttgttgcagcttgcatatcacctaaaggggaatggatatattgtgtt
ggggaagacaggaacctgtactgcttcagccatcaatctggcaaactagagcacttgatg
aaggtgcatgagaaggatgttattggcatttgtcaccatccccaccggaatcttgtagcc
acgtacggtgaagactgcaccatgaaactatggaagccttga

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