Cynara cardunculus var. scolymus (artichoke): 112509732
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Entry
112509732 CDS
T05604
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112509732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112509732
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
112509732
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
112509732
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Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
ECR1_N_2
RRP4_S1
CHASE5
Motif
Other DBs
NCBI-GeneID:
112509732
NCBI-ProteinID:
XP_024970614
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Position
LG 3:complement(2971527..2977654)
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AA seq
198 aa
AA seq
DB search
MQEKIAEEEMVTPGEVLGKGSEVKAGRGAYIAPYNNTVYASLTGRRCIVPSSPESPDQRP
TVEVIGHKAHGPVPEPGCVVIARVTKVMARMASADIMCVGSKAVREKFSGIIRQQDVRAT
EIDKVDMHTSFRPGDIVKASVLSLGDARAYYLSTAQNELGVVSAESMAGGTMVPISWTEM
QCPLTGQIEQRKVAKVGA
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaaaaatagcagaggaggagatggtgacaccaggggaagtattgggcaaagga
tccgaagtgaaagcagggaggggagcatatatcgcaccctacaataacaccgtctacgcc
tccctcaccggccgccgttgcatcgttccttcgtcgcctgaatctccagaccagaggcca
actgtggaagtgattggacacaaagcccacggtcctgttcctgagccaggttgtgttgtc
attgctcgagtaactaaggtgatggctaggatggcttctgctgatattatgtgtgttggt
tcgaaagctgtgcgagaaaagttctctggcatcatcaggcaacaagatgtcagagcaacc
gagattgacaaagtagatatgcatacatccttccgccctggtgacattgtcaaagcttcg
gtactttctctaggagatgcgcgtgcatattatctttcaactgcacaaaatgaactgggc
gttgtatcggcagaaagcatggcaggcggcacgatggttccaattagctggacggagatg
cagtgtccgttgactggtcaaattgagcagagaaaggttgctaaagttggagcttga
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