Cynara cardunculus var. scolymus (artichoke): 112509781
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Entry
112509781 CDS
T05604
Name
(RefSeq) rhamnogalacturonate lyase B-like isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
112509781
Enzymes [BR:
ccav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
112509781
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
112509781
NCBI-ProteinID:
XP_024970693
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Position
LG 3:19646518..19652446
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AA seq
667 aa
AA seq
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MGIWSSFRTVIKSICTCGRGDHHEGLGPISSMGVRLRIQDHHVVMDNGILQVTLSNPEGL
VTGVRYNGLDNVLEVLNHEGNRGYWDVVWSALGESGRKGVFEVIKATSFKVIVETEDQVE
VSFSRPWDPSLQDKLAPINIDKRFVLLRGSSGFYTYAIYEHVGSEEWQAFSLGETRIAFK
LRKDKFHYMAVADDRRRYMPLPDDRLAGRAQPLAFQEAVSLVNPVVPEFKGEVDDKYQYT
CENRDLMVHGWISNDPPVGFWQITPSNEFRTGGPLKQNLCSHVGPTCLAVFVGAHYAGDD
LVPKFGQGEPWKKVFGPVFIYLNSAMCGQDPLSLWDDAKRQMMVEVKSWPYSFPASEDFP
KSHQRGNVRGRLLVRDRYLHNDDMPANGAYVGLAPPGDVGSWQRECKDYQFWTEADCIGD
FSINNVRAGEYNLYAWVPGFLGDYRYHVPITITPGCDINVGNLVYEPPRDGPTLWEIGIP
DRSAAEFHVPEPNPRYRNQLFVNNPKSNFRQYGLWERYGELYPCGDLVFTVGESDYRKDW
FYAQVPRRKEDNSYEGTTWQIKFQLENVQRAAIYKLRMALAGATLAEVQVRVNDPNKARP
LFTTGLIGRDNAIARHGIHGLYWLYNIDISGGLLVQGENTIYLKQPRNQSPFQGIMYDYI
RLEAPPP
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgggaatttggagtagcttcagaacggtgattaaaagtatatgcacatgtggaagaggg
gatcatcacgagggacttggaccaatatcatctatgggtgtgcgattgcggattcaagat
caccatgtggtgatggataatggcatactgcaagtgacgctatcgaatccagagggcctt
gtcactggggtacgatataatggccttgacaatgttctcgaggttcttaatcatgaaggt
aatagagggtattgggatgtggtgtggagtgctctaggtgaatcaggaaggaaaggagta
tttgaagtgatcaaagcaacaagctttaaggtaatagtggaaacagaggaccaagtggag
gtgtctttttcaagaccatgggatccttccctacaggacaaacttgctcctataaacata
gacaagaggtttgttttgcttcgtggttcctctggtttctacacctacgccatttatgaa
cacgtgggttctgaagaatggcaagctttcagtcttggtgaaactcgaatagcattcaaa
ctcagaaaagacaagtttcactacatggcggtggcagatgatagaagaagatacatgccc
cttccagatgatcgattagcaggaagagcccaaccccttgcctttcaggaagctgtttcg
cttgttaacccagttgtgcctgagttcaaaggagaagtggatgacaagtatcaatatact
tgtgagaacagagacctcatggtacatgggtggatatcgaatgaccctccagttgggttt
tggcaaattacacccagcaacgagttccggacgggggggcctctcaagcagaacctgtgt
tcccacgtgggccccacttgcctagctgtttttgttggtgctcattatgctggggatgat
ttagttccaaaatttggacagggcgagccatggaaaaaggtctttgggccggtttttatc
tatctaaattcagcaatgtgtggacaagatcctctttcactttgggatgatgcaaaaaga
cagatgatggtcgaggtcaagagttggccttatagctttccagcatctgaggatttccca
aaatcacatcagcgaggaaatgttagaggcagattacttgttcgggacagatatcttcac
aatgatgacatgccagcaaatggtgcatatgttgggttagctccaccaggagatgttgga
tcatggcaaagagaatgcaaggactaccagttctggactgaagcagattgcattggagat
ttctccattaacaatgtaagagctggagaatataatttgtatgcttgggtccctggattt
cttggagactaccgataccatgttcccattaccatcactccaggctgtgatattaacgtg
ggcaatcttgtttatgagcccccaagagatggtcctacattgtgggaaataggtatccca
gatcggtctgctgcagagttccatgtcccggagcctaaccccagataccggaatcaactt
tttgtcaataaccctaagagcaactttaggcagtatggcttatgggaaaggtatggagag
ttgtacccttgtggtgacctggtgttcactgttggagagagtgattatcgcaaagattgg
ttctatgctcaagttccaaggagaaaagaagacaattcatatgaaggaaccacatggcaa
ataaagttccaactcgagaatgtccagcgtgctgctatttataagttacgaatggcacta
gctggtgcaactcttgctgaagtacaggttcgggtaaatgatccaaacaaagctcgccca
ctatttacaacgggattgataggacgtgacaacgcaattgcaagacatgggattcacggg
ttatattggctatacaacatagacatttcagggggtttgttggtccaaggagaaaacact
atttatctgaaacaacccaggaaccaaagcccctttcaaggtatcatgtatgattatata
cgcctagaagctcctcctccttaa
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