Cynara cardunculus var. scolymus (artichoke): 112509887
Help
Entry
112509887 CDS
T05604
Name
(RefSeq) protein HASTY 1 isoform X1
KO
K14289
exportin-5
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112509887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccav03016
]
112509887
03036 Chromosome and associated proteins [BR:
ccav03036
]
112509887
Transfer RNA biogenesis [BR:
ccav03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
112509887
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
112509887
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exportin-5
Xpo1
IBN_N
Motif
Other DBs
NCBI-GeneID:
112509887
NCBI-ProteinID:
XP_024970855
LinkDB
All DBs
Position
LG 1:20620149..20637886
Genome browser
AA seq
1198 aa
AA seq
DB search
MDNSGTANDVARAILTALGWNSSSDDRKSAMSYLESVKAGDVRVLASTSFVLVKKEWSSE
VRLHAFKLLQHLVRLRWDELTPEERREFANVSIDLMNEIANSCEEWALKSQTAALIAEIV
RREGLSLWQELVPSLVSLSSSGPTHAEMVCMMLRWLPEDITVHNEDLEGDRRRLLLRGLT
ESLPDILPLLYTLLERHFGAAMTEAGRQQLDIAKQHAAAVTATLNAINAYAEWAPLPYLS
KYGTIHGCGFLLSSPDFRLHACEFFKLVSSRKRPVDADSDFDSAMSSILVILMNASTDFL
NRSESGYGVINDSDYEFAECICESLVALGSTNLQCITGDNERLSLYLQKMVQYFKHYKLE
LHYQSLIFWLALMRDLLSKPKTSVGDGSVDNLTSGSGQADNQKRMILPFVNDEICSIMLD
ISFQRMLKKEKANPGNELSGGALELWGDDFEGKGDFGQYRSKLLELIRLIASFKPLIAVT
KVSDTVILIIKNLLLSPLPSGNLAILESMQLALENVLGTVFDGPNDDNGSGSDAQLASCR
VLEGLLQQLLSLKWTEPEFVEVLGHYLEALGPFLKYYADAVGSVINKLFELLTSLPIVMK
DPSTSRARHARLQICTSFIRLAKTADSRLLPHMKGIADTVAYLQKEGQLLRGEHNIFGEA
FLIIASAAGSQQQQEVMTWLLEPLSNQWTQLEWQNSYLSDPAGLVKLCAETQFMWSLFHT
VTFFEKALKRSGVRKGNTNINNSIASSIPSHPLASHLPWMLPPLLKLLRAIHSLWSPPVT
QLLPGQIKAAMIMSDFERTSLLGESNPKVPKSAITFADGFHLNMKDGNGEPNEIDIRNWL
KGIRESGYNVLGLSTTVGDSFFRCTDIEAIDLALMENIGSMEFRHMRQLVHSILIPLVKN
CPTELWDVWLKRLLYPLFEYSHQALRCSWSGLLDEGRAKVPDLHGILGGSDLKVEVMEEK
LLRDLTREICSLLSVLGSPGLNCGLHSEQSGHGSRSDVLAPKDSDVMSSSVVGFLLKNKD
IAIPVLHLCLDAFRWTDGEATIKVASFCGAVVLLAISTDNVELRQFVCKDLFSAIIQGLA
LESNAFTSADLVGLCREIFVNFCTKDPAPRQILLSLPCIAHQDLVAFEEALGKTSSPKEQ
KQLMKSFLLVGTGNKLKALAIQKSVNVITNVVARPRSSVSVPDSRTEDGGAIGLAAIV
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggacaacagtggtacggcgaacgatgttgcccgggctattctcaccgcccttggctgg
aattcttcctccgatgatcgcaaatcggccatgtcctacctagaatctgtaaaagctggg
gatgtccgtgtattggcaagcacatcatttgttttagttaagaaagagtggtcttctgaa
gttcgtttgcatgcatttaaattgttgcagcatctagtgcggttacggtgggatgagcta
acccctgaagaaagacgagagtttgcaaacgtgtctattgatttaatgaatgaaattgca
aatagctgtgaggagtgggctctaaaaagtcagacagctgccctaattgctgagatagtt
aggagagaaggcttaagtctatggcaagaacttgtaccgtctctagtatctctttccagc
tctggtcctacacatgctgagatggtgtgtatgatgctaaggtggcttccggaagatatc
accgttcacaatgaagacttagaaggtgatcggcgtagactgttgttacgtgggctaact
gaatctttgcctgacattttgccattgttgtatacattattagagaggcactttggagct
gccatgactgaagcaggtcggcaacaacttgacattgcaaagcaacatgcagctgcagta
acagctactcttaatgctatcaatgcttatgctgagtgggctcctctgccctatctttca
aaatatggcacgatccatggttgtggcttcttactctcttctcccgatttccggcttcat
gcgtgcgagtttttcaagcttgtgtcctcaaggaagagaccagttgatgcagattctgat
tttgattctgcaatgagcagcatccttgtgatattgatgaatgcgtctacagactttttg
aacagatcagagtcgggttatggtgttatcaatgatagtgactatgagtttgcggagtgt
atctgtgaaagcttggtggctttgggttctacaaacttgcaatgcatcactggtgataat
gaaaggctatctctgtatttacagaagatggtgcagtatttcaaacattataagctcgag
cttcactatcagtctcttatattttggctggcattaatgagagatttgctctcgaagcca
aagacttcagttggagacggttcagttgacaatctgacatctggttcagggcaggctgat
aatcagaagagaatgatcttaccttttgtgaatgatgaaatctgtagcatcatgttggat
atatcttttcagagaatgcttaagaaagagaaagccaatcctggaaatgaactttctggt
ggggcattggaattatggggtgatgatttcgagggaaagggagattttggccagtatcgt
tcaaagctgttggaactcattcgacttatcgcgtctttcaaaccccttatcgccgttaca
aaggtttctgacacagttattttgatcatcaagaaccttctgctttctccactgccttct
gggaatttggccatactggaaagcatgcaacttgctttggagaatgttttgggaacagtt
tttgatggtccaaatgatgataatgggagtggctcagatgctcaacttgcttcatgcaga
gtacttgaaggtctacttcagcaacttctttctctaaaatggacggaacctgaatttgtt
gaagtactggggcactatttagaggcactgggtcccttcttgaagtattatgccgatgct
gttggaagtgtcatcaataaactgtttgagctcctaacctcattgccaattgttatgaag
gatccttcaaccagtagagctagacatgcaagattacaaatttgcacatcctttatacga
ttagccaaaactgctgacagccgtcttttaccgcacatgaagggcatagcagacacagta
gcatatttgcaaaaggaagggcaattgcttcgtggcgagcataatatttttggtgaagca
tttctcattattgcatctgctgctgggtctcaacagcagcaagaagttatgacctggttg
cttgagcctttgagcaatcagtggacacaactcgagtggcaaaattcatatttatctgat
ccggcaggcctggtgaaattgtgtgcggagacacagtttatgtggtcattattccacacg
gttacattctttgagaaagcacttaagaggagtggtgttagaaaaggcaacactaatatt
aataattctatagcatcttctattccatcacatccattggcttctcatctgccctggatg
ctaccacctcttctgaaacttcttcgtgctatacattctctttggtccccgcctgtaact
caattgttacctggccaaataaaggctgctatgatcatgagtgattttgagcgaaccagt
cttcttggggaaagtaaccctaaagtgcccaagagtgcaattacttttgctgacggtttc
cacttgaatatgaaagatggaaatggtgaaccaaatgaaattgatatcaggaactggtta
aaaggtatcagagagagtgggtataatgtattggggctgtcaacaacagttggagattca
tttttcagatgcacagatattgaagccattgacttggcactaatggagaatattggttcg
atggagttcagacatatgaggcaacttgttcattcaattttgataccactagtaaagaat
tgccccacagagctgtgggatgtatggttgaaaaggctcctatatccgctgtttgaatat
tctcatcaggctctgagatgctcatggtctggtctcttggacgaagggagagcgaaggtt
ccagatcttcatggaattttaggtggatctgatttaaaagtggaagtgatggaagaaaaa
ctacttcgagatttaactcgtgagatttgctcgcttctttcagttttaggttctcctgga
ttgaattgcgggcttcattcagagcagtctgggcatggcagtcgtagtgatgtattggca
cctaaagattcggatgttatgtcgagctctgtagttgggtttcttttgaagaacaaggat
attgccattcctgttttacatttgtgtttagatgcttttagatggactgatggtgaagcc
actattaaggttgcatccttttgcggagccgttgttcttctggctatctcgacagataat
gttgaactccggcaatttgtttgtaaagatttgttctccgcgataatccaaggtctagcc
cttgagtcaaatgcttttaccagtgccgacctggttggtctctgccgtgaaatatttgta
aacttctgtacgaaagacccagcacccagacaaattttgctctctcttccttgcattgca
catcaagatctggttgcctttgaagaggcattggggaagaccagtagccctaaggaacaa
aaacagcttatgaaaagcttcttgttggtaggcactggaaacaagttgaaagcccttgct
attcaaaaaagtgtgaatgtaatcacaaatgttgtcgcgaggcctcgaagctcggtatct
gtcccagattccagaaccgaagacggaggtgcaatcgggttggctgcaattgtgtaa
DBGET
integrated database retrieval system
