Cynara cardunculus var. scolymus (artichoke): 112510214
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Entry
112510214 CDS
T05604
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18 isoform X1
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccav03009
]
112510214
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112510214
Ribosome biogenesis [BR:
ccav03009
]
Eukaryotic type
Pre-60S particles
Helicases
112510214
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
Reovirus_L2_MT1
Motif
Other DBs
NCBI-GeneID:
112510214
NCBI-ProteinID:
XP_024971317
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All DBs
Position
LG 3:7038032..7044059
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AA seq
590 aa
AA seq
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MALTESSNPNRALTDTRFSDLNPPLSDEVIDVLSSSGFEFCTPVQAATIPLLCSYKDVAV
DAATGSGKTLAFVVPLVEILRRTTSAKPQEVLGIIISPTRELSSQIFHVAQPFISSLPDI
KPVLLVGGTEVKVDMKKIEDEGANLLIGTPGRLHDIMDRVDILDFRNLEILILDEADRLL
DMGFQKQINSIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAETKSLGCSSS
GHVASSKTPSGLHIEFITCEADKKSSQLVDFFIKNKSKKIIVYFMTCACVDYWGVVLPRL
AALKGLSLISLHGKMKQTAREKALASFTSLSDGILLCTDVAARGLDIPGVDCIVQYDPPQ
DPNVFIHRVGRTARLGRRGSAIVFLLPKEEAYVEFLRIKRIPLEEKTCSEDALDVVPHLR
AAAKKDRDVMEKGLRAFVSYIRAYKEHHCNYILRWKDLEIGKLGMGYGLLQLPSMSEVKQ
NSLSTDGFIAAEDINLEEIKFKDKSREKQRKKNLQVKKDVQQEPKTHKAKSTAKNTPAVM
KKKTAKQRRAAQSAEDDDELAREYRLLKKLKKGAINEAEYAKLTGTEELL
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggcgttaactgaatcttcgaatccaaacagagccttaactgatactcgtttctccgac
ctcaatccgccactttccgatgaagttattgacgtgttatctagttcaggcttcgaattc
tgcactcccgtgcaggcggccaccatacctttgctatgcagctacaaggatgtcgcagtc
gacgccgccaccggttcgggtaaaaccctagcatttgttgttccactcgtcgagatactc
cgtcgcacgacttctgctaaacctcaggaggtcctgggaattatcatatctccaacaaga
gagttatcgtcacaaatattccatgtcgcacaaccatttatttcatcactgccagatatt
aagccagtgctccttgtggggggaaccgaagttaaagtagacatgaagaaaatagaggat
gaaggagcaaacttgttaataggcacacctggtaggctacatgacataatggatcgcgtg
gatatcttggattttcgtaaccttgagattttgattctggatgaggctgatagactactg
gatatggggtttcagaagcagataaattcgataatatctcgcttaccaaagctacgtaga
actggtctcttctcagctactcaaaccgaggctgtcgaagaactatcaaaggcgggatta
aggaaccctgtaagagttgaagttcgtgcagagacaaaatcattaggatgttcttcctca
ggccatgtggcctcctcaaaaacaccttcaggccttcatattgagtttatcacatgtgaa
gccgacaagaaatcatcacagctcgtggatttcttcattaagaacaagtctaagaagata
atagtctacttcatgacttgtgcttgtgtggattattggggggttgtacttccacgtctt
gctgccctgaaggggttgtctttaatttctcttcatgggaagatgaagcagacagcaagg
gagaaagccttagcgtcatttacatctctttcggatggcattcttctgtgcactgatgtt
gcagcacgtggacttgacattccaggcgttgattgcatagtgcagtatgaccctcctcag
gatcctaatgtgttcattcatagagttggacggactgcaaggttgggacgacgaggaagt
gccattgtttttcttttaccaaaggaggaggcatatgtggaatttttgcgcattaaaagg
attccactagaagagaaaacatgctccgaagacgcgcttgatgtggttccccatttacgt
gctgctgcaaagaaggatcgtgatgtcatggaaaaaggactaagagcattcgtttcttac
atccgtgcttacaaagagcatcactgcaattacattctcagatggaaagacctagagatt
ggaaagttaggcatgggatatggcttattgcagctaccttcaatgtcagaggtaaaacag
aactcactttctaccgatggatttattgctgctgaagatataaacctggaggaaatcaag
ttcaaggataaatctagagagaaacaaagaaagaaaaacctgcaagtgaagaaagatgtg
cagcaagaaccaaaaacccacaaggctaaatccaccgcaaagaacacacctgctgtcatg
aagaagaaaacagccaagcagcgacgtgctgcacagtcagccgaggacgacgatgaactt
gcaagagaatatcggcttctgaaaaagcttaaaaagggagctattaacgaagcagaatat
gccaaactaactggaacagaagaattgctttga
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