Cynara cardunculus var. scolymus (artichoke): 112510484
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Entry
112510484 CDS
T05604
Name
(RefSeq) WD repeat and HMG-box DNA-binding protein 1
KO
K11274
chromosome transmission fidelity protein 4
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccav03036
]
112510484
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
112510484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mcl1_mid
WD40_WDHD1_1st
Beta-prop_WDR5
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
ANAPC4_WD40
Beta-prop_Aladin
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
EIF3I
WDR55
WD40_Gbeta
Beta-prop_IFT140_1st
Ctf4_C
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_IFT122_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
NBCH_WD40
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_WDR75_1st
Tricorn_2nd
eIF2A
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_ELP1_1st
WD_LRWD1
Beta-prop_VPS8
Histone_HNS_N
Rrn6_beta-prop
Motif
Other DBs
NCBI-GeneID:
112510484
NCBI-ProteinID:
XP_024971675
LinkDB
All DBs
Position
LG_3
Genome browser
AA seq
962 aa
AA seq
DB search
MKIRSMKLREAHKNDGVSSYCTILWDLTAEHIVTASSSDASISIHDALLPSNTPKFLRNH
RDGVTTLALSPNSTCLASGSSDRSVKLYKFPGGEFETNITRFTLPIRALSFNRSGTMLAA
GGDDDGIKLINTIDGSIARVLKGHKGSITGIAFDPKSEYLASVDSVGTVMIWELQSGATI
HTLRNVAPNTSSDFSTLSALGWSPDGEMVAVSGLKNDVVMYDRDTAEKLFTLRGDHTTPV
CFLAWSLNGKYIATSGLDRQVLIWDVDKKQDIERQKFDEAICCMAWKPHGNALAVIDVMG
KYGVWDLVVPSSMKSPTEGVPTLSSKRSDGLLFFDEEEQEPSTSGSISDHGEDSLVSTEP
LTRKRLRKHFKYDEDSDEDMNDGTSLLPKVESRKKPSIAGRDGLKNGKVTPTGPLILTGS
IMQEAFQPGATPMQSGKRRFLCYNMLGSITSMEHDGYSHIEIDFHDTGRGPRVPAMTDYF
GFTMASLNENGSVFANPCKGEKNMSTLMYRPFKSWANNSEWSMRLEEEEVRAVALGTSWV
AAVTSLNFLRIFTEGGLQRHVVSLDGPVVTACGFGDELAVVMHSAPSLPSNEQMLEFRVF
NVSNGTQPIRGRLPLTPGSCLTWFGFSEEGQLSSFDSMGVLRVFTSQYRGSWLPLFTASK
LKKKEENYWMVGLNSSKLFCILCKSPDKFPQAVPKPVLTLLDHSIPLASSDLGAETLENE
FIVSNMHLSQIQRRIEDTEGVGQDTTSLEDEAFNTEAALDRCILRLIASCCNGDKLVRAT
ELVKLLSLEKSVRGAIKLVTALKLPNLAERFNTILEERLLKEATDTISVKETTEPESSKA
SEPVNAPQSGSSSFVKKRTIEAVNEVVQPGQLSAPSFVKKKAVEPVNEVQSGQLSSPSFV
KKKTTEEAAKVTKPENSKGLGVKKNIGEVEFHRSSNPFAKSSANHERTSLLDSLKKLKKN
DG
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcagatcgatgaagctgcgcgaggctcacaagaacgatggtgtaagctcctat
tgtacgatcctgtgggacctcactgccgagcacattgttactgcttcttcttctgacgcc
tccatttccattcacgatgctcttttaccttcaaatactccgaaatttcttcgcaatcat
agagatggagtcaccactttggctctcagtcctaattccacatgcctggcttctggatcc
agtgaccgctccgtcaaactctataagttccctggaggagaatttgagacaaatattacc
agatttacactgccaattcgtgcactgtctttcaatagatcgggtaccatgctagcagct
ggtggtgatgatgatggtattaaacttattaacacaatagatggttcaattgcaagagtt
ttaaaaggacataaagggtctatcacaggcatagcttttgatccaaaaagtgagtacttg
gcttctgtcgattcagttggaactgttatgatttgggagctccaatctggtgcaacaatt
cacaccctcagaaatgtcgctcctaatacctcctctgacttttcaactttaagcgcactt
ggttggagtccagatggagagatggtagctgtttctggtttgaaaaatgatgtggttatg
tatgatagagatacagctgaaaaactctttacattgagaggtgatcacacaacaccagtg
tgcttcttggcttggtcacttaatggaaaatatattgctacctctggcttagataggcaa
gttttgatctgggatgttgataagaaacaggacattgaaagacagaaatttgatgaagca
atatgttgcatggcatggaagccacatggaaatgccttggctgttattgatgttatgggg
aaatatggtgtttgggacttggttgtcccatcatctatgaaatcccctacagaaggagtt
cctactttgagttcaaaaagaagtgatggtctactcttttttgatgaagaggaacaagag
cctagtacatcaggcagtataagtgatcatggtgaagacagtcttgtcagtactgaacca
cttaccagaaagagattacgcaaacattttaagtatgatgaagattcagatgaggatatg
aatgacggaacgagtttgcttccaaaggttgaatcccgtaaaaagccttccattgctggc
agggacggtctcaaaaatggtaaggtgacaccaacaggtccactgattttaacaggatca
ataatgcaggaagcttttcagccaggtgctactcctatgcagtctggtaaaaggagattt
ttgtgttataatatgcttggaagtataacctcaatggagcatgatggatactcccatata
gagattgattttcatgacactggcagggggcctcgagttcctgcaatgactgattatttt
ggtttcactatggcttccttgaatgaaaatggaagtgtttttgcaaatccctgcaaaggt
gagaaaaacatgagcaccctcatgtaccgtccattcaaaagctgggcaaacaatagcgag
tggtctatgcgacttgaagaagaagaagtaagagctgtagcgcttggcacttcttgggtt
gctgctgttacaagtttaaatttccttcgcattttcacagagggcggtttgcagaggcat
gtggtttcacttgatggacctgtagtgactgcatgtggctttggggatgaacttgcagtt
gtcatgcattctgctccctccctcccttcaaatgagcagatgctagagttcagagtattc
aacgtttcaaacggaacccagcctattagaggacggttgccattgactcctggttcgtgc
ttaacatggtttggttttagtgaagaaggtcaactgagttcctttgattccatgggtgtt
ctccgagttttcactagtcagtatcgaggaagttggcttccactcttcactgctagtaaa
ttaaagaagaaagaggaaaactactggatggttggattgaactcaagcaagttgttttgc
attctatgcaaatcccctgataaatttccacaggccgtccctaaaccagttcttaccctg
ttagatcattcaatccctcttgcatcatccgacttgggggcagaaactcttgagaatgaa
ttcattgttagcaacatgcatctctcccagatccaaagaaggattgaagacacagaggga
gtgggtcaggataccacctcactcgaagatgaggccttcaatactgaagcagctttggat
agatgcatcttgaggctcattgcttcctgctgtaatggggataaacttgtgagggctact
gaacttgttaagcttctttcactggagaaatccgtgagaggtgcgataaagctcgtgact
gcactgaaactaccaaatttggcagaaagattcaacacgatattggaggaaaggttgctt
aaagaagccacagatactatatcagttaaagaaacaacagaaccagaaagcagcaaggct
tcagaacctgtgaatgcaccacaatctggatcatcttcatttgtgaagaaaaggacaata
gaagctgtgaatgaagtggtacaacctgggcaattatcagcaccttcatttgtgaagaaa
aaggcggttgaacctgtgaatgaggtacaatctgggcaactatcatcaccttcatttgtg
aagaaaaagacaacagaagaggcagcaaaggttacaaaaccagaaaatagtaaaggttta
ggtgttaagaagaatataggtgaggtggagtttcatcggtcaagtaatccgtttgcgaaa
tcctcagccaatcacgaaagaacatcgttgttagattcccttaagaaattgaagaagaac
gatgggtaa
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