Cynara cardunculus var. scolymus (artichoke): 112510526
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Entry
112510526 CDS
T05604
Name
(RefSeq) protein GIGANTEA-like
KO
K12124
GIGANTEA
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
112510526
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Gene cluster
GFIT
Motif
Pfam:
Dimerisation
MASE9
Motif
Other DBs
NCBI-GeneID:
112510526
NCBI-ProteinID:
XP_024971744
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All DBs
Position
LG 3:4525618..4538810
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AA seq
1160 aa
AA seq
DB search
MAATSERWIDGLQFSSLFWPPPQDPEQRKAQITAYVDYFGQFTSEQFPEDIAELVRHRYP
SNEKRLFDDVLAMFVLHHPEHGHAVILPIISCIIDGTMEYDRSTPPFASFISLVCPSSDN
EYSEQWALACGEILRILTHYNRPIFKMEGQHGETDRSSSGSQASTSNSTDGESSSPSMQH
ERKPLRPLSPWITDLLLAAPLGIRSDYFRWCGGVMGKYAAGELKPPSVVLASSRGSGKHP
QLMPATPRWAVANGAAVILSVCDEEVARYETATLTAAAVPALLLPPPTTAMDEHLVAGLP
ALEPYARLFHRYYAIASPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEDYASGM
RLPRNWMHLHFLRAIGTAMSMRAGIAADSAAALLFRILSQPALLFPPLRQVEGVEVQREP
MGGYVSSHKKQRQMPAAEATIEATAQGIASMLCAHGPEVEWRICTIWEAAYGLIPLSSSV
IDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVEAILQRTFPA
ESLFEQTRKTRYVFGSASKNLAVAELRTMVHSLFLESCATVELSSRLLFVILTVCVSHEA
QLHVGKKPRGEDSFPHVNANEESEASSGKQRKLGAKRMNKQGPVAAFDSYVLAAVCALAC
ELQLFPLISRTSKHSNLEDAQDVAKAAKAVKSSNGFQNSIDSAVSHTRRILAILEALFSL
KPSSVGTSWSYSSNEIVAAAMVAAHISELFRRSKACMHALSVLMRCKWDKQIHSTATSLY
NLIDIHSKAVASIVNKAEPLDAHLLHAPIWKDSLVCLNGKRQNNSANASCSETGQSSTMQ
FDDPVTARTLVTSEKVSKLCEDSDSGSEKGITSFPFNASELANFLTMDRHIGFNCSARVL
LRSVLTEKQELCFSVVSLLWHKMIASPETQLSAESTSAQQGWRQVVDALCNVVSASPTTA
ATAIVLQAGRELQPWIAKDDDLGQKMWRINQRIVKLIVELMRNHDMRESLVILSSALDLL
LRATDGMLVDGEACTLPQLELLEATARAVHPVLEWGESGLAVADGLSNLLKCRLPATVRC
LSHPSAHVRTLSISVLRAILHVGPIKASGEHRLDGGNGIVEWEADLGKCLTWEAHSRVAT
GMPIEYLDTAAKELGCPIAI
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggctgctacatctgaaaggtggattgatggtctacaattttcgtcactgttttggcct
ccacctcaagatccagagcagcggaaggcacaaattacagcatatgttgattactttggt
caattcacatcggaacaatttcctgaagatatagcagagttggttcgccatcgttatcca
tcgaatgagaagcgcctctttgatgatgtcttggcaatgttcgtacttcatcatccagag
catgggcatgctgtcattcttcctataatttcatgcatcattgatggtacgatggagtat
gatagaagcactcccccgtttgcttctttcatttcgttggtctgcccaagttctgataat
gagtattctgaacaatgggcgctggcatgtggagagattttacgaatattaacccattac
aatcgaccaattttcaagatggagggtcagcatggtgaaacagatagaagcagcagtggc
agccaagcatctacaagtaactctacagatggtgaatcgtcttcaccatctatgcagcat
gaacggaaaccactgagacctttgtcgccttggattactgatctgttgcttgctgcacct
ctaggtatcagaagtgactacttccgttggtgtggaggtgtcatgggaaaatatgctgca
ggggaactcaagccaccttcagttgtcttggcttcttctcgtggatctggaaagcatcct
cagctaatgccagctactcctagatgggctgttgctaatggtgctgctgtaatattaagt
gtatgtgacgaggaagttgctcggtatgagactgccactctaactgcagctgctgttcct
gctcttttacttccacctccaacaacagccatggatgagcaccttgttgcaggccttcct
gctttagagccgtatgcaagattattccataggtattacgctattgctagtccgagtgcc
acacaaaggcttcttcttggactcttagaagcaccaccatcatgggctccagatgctctt
gatgctgctgttcaacttgtcgagcttcttagagcagcagaagactatgcatctggcatg
aggcttcccagaaactggatgcatttgcatttcttgcgtgcaattggaacagcaatgtcc
atgagagcaggcattgcagcagattcagcagctgctttacttttccggatactctcccaa
cctgctttgctttttcctcctcttagacaagtggaaggagttgaagtccaacgtgagcct
atgggtggttatgtttcaagccataaaaagcagagacaaatgccagcggctgaagcaacc
attgaagctactgcccaagggattgcctcgatgctttgtgcgcatggacctgaggttgaa
tggaggatatgcaccatatgggaagctgcttatggcttaattcctttgagttcttctgtt
attgatcttcctgaaatcattgttgcaacccctttgcaacctcctattttgtcatggaac
ctatacatacctctccttaaagttcttgagtaccttcctcgtggaagtccatctgaagct
tgtctcatgaagatatttgttgctactgtcgaggcaattcttcaacgaacatttccagca
gagtccttgtttgaacaaacaagaaaaacaagatatgtatttggctctgcctccaaaaat
ctagctgtggcagagcttcgcactatggtccactccctctttttagaatcatgtgccact
gtagagctctcgtcacgactactttttgttatattgactgtgtgtgtaagtcatgaagca
cagcttcatgtgggtaagaaaccaagaggtgaagatagttttcctcatgtcaatgccaat
gaggaatcggaagcatcgtctggaaagcaacgaaaattgggggctaaaagaatgaataag
caaggacctgttgcagctttcgattcttatgttctagctgcagtttgtgctcttgcctgt
gaacttcagctctttcctttgatttcaagaacaagtaagcattcaaatttggaggatgca
caggatgttgcaaaagcggcaaaggcagttaaatcttccaatgggttccagaatagtatt
gattctgcagttagccatactcgccggatactggcaattttagaggcacttttctccctg
aagccatcttctgttggtacctcttggagttacagttcaaatgaaatagttgctgctgct
atggttgcagctcatatttctgagcttttcagacgatcaaaggcttgcatgcatgctctc
tcggttttgatgcggtgcaagtgggataagcaaattcactccacagcgacttcactttat
aatttaattgatattcacagcaaagctgtagcatcgattgtcaacaaggcagaaccactg
gatgcccatctattgcatgcacccatctggaaggactcccttgtatgcttaaatggtaaa
agacaaaataattctgcaaatgctagctgctctgagacgggccagtcgtcaaccatgcag
tttgatgatccagtcactgcgagaactctggttactagtgagaaagtttctaagttatgt
gaggacagtgacagcggctctgagaaaggaataacgagcttcccattcaatgcttcagag
ttggccaacttcctcacaatggacaggcatattggatttaattgtagtgcacgggtactt
ttgaggtcagtactgacagagaaacaagaattatgtttctctgttgtttcattgctctgg
cacaagatgattgcatcacctgaaacacaacttagtgctgaaagcacctctgcacagcaa
ggatggagacaggtggttgatgcactttgcaatgtggtgtcagcttcaccaacaacagct
gcaactgctattgttcttcaggccgggagggaattgcagccttggatcgctaaagacgat
gatcttggtcaaaagatgtggagaatcaaccagcgtatagtgaagttgattgtggagcta
atgagaaatcatgacatgcgagagtcattggtgattttgtccagtgcattagacctcctc
ctccgtgccacagatggcatgctcgtcgatggagaagcatgcactttaccccaacttgag
ctcctggaagcaacagcgagagcagttcacccggtgcttgagtggggagaatctgggttg
gcagttgcagatggcctctcaaatcttctcaagtgtcgtctgccagctacagtacgttgc
ctttctcacccaagtgctcatgtgcgcaccctcagtatatcggttcttagagctattttg
catgttgggccgataaaagcaagcggtgaacatcggctggatggggggaatgggatcgtt
gagtgggaagcagacctagggaagtgtttaacctgggaagctcatagtcgagtggctact
ggaatgccaatcgaatatcttgatactgctgccaaggaattggggtgtccgatagccatt
taa
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