Cynara cardunculus var. scolymus (artichoke): 112510761
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Entry
112510761 CDS
T05604
Name
(RefSeq) sm-like protein LSM1B isoform X1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112510761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112510761
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112510761
mRNA degradation factors
5'-3' decay
Lsm complex
112510761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
112510761
NCBI-ProteinID:
XP_024971861
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All DBs
Position
LG_4
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AA seq
150 aa
AA seq
DB search
MRFVSISKNFSVIFLIPKSLSAMSWAGPEDIHLSTSLASYLDKKLLVLLRDGRKLLGILR
SFDQFANAVLEGACERVIVGDLYCDISLGLYVIRGENVVLIGELDLEKEELPPHMTCVSE
TEIKRAQKVEREATDLKGSMRKRMEFLDMD
NT seq
453 nt
NT seq
+upstream
nt +downstream
nt
atgcgatttgtttcaatttcaaagaatttttcggtgatttttctgataccgaaaagcttg
agtgcaatgtcttgggctggtcctgaagatatacatctgtctacttctcttgcaagctat
cttgataagaaacttctcgtattgctaagagatggtaggaagctgttggggatacttcgc
tcttttgatcaatttgccaacgctgtccttgaaggggcttgtgaacgagtgattgttggt
gatctttattgtgatatctcgttaggtctctatgtaatccgtggcgagaatgttgttttg
attggcgagctggatctagagaaggaggaactcccccctcatatgacctgtgtttctgaa
actgagataaaaagggctcagaaagtagagagggaagcaacagatctgaagggttcaatg
agaaagaggatggagtttcttgatatggactga
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