Cynara cardunculus var. scolymus (artichoke): 112510810
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Entry
112510810 CDS
T05604
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav00040
Pentose and glucuronate interconversions
ccav01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112510810
Enzymes [BR:
ccav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112510810
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Gene cluster
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
112510810
NCBI-ProteinID:
XP_024971926
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Position
LG 4:complement(6591606..6593655)
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AA seq
433 aa
AA seq
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MEGIRFCFLFFIFSVPTIEANIAHYDEFWQKRAEEAKSSARVAYRSKPEEVINQLNHEVH
LTVTGRRNNTRKLHKKYNGPCMTTNPIDQCWRCDRNWAKNRQKLAECAQGFGRKATGGKD
GKIYVVTDPSDNDMVNPKPGTLRHAVIQLEPLWIIFERDMVIQLAQELIMTGNKTIDGRG
AQVHIAHGAGLTLQFVQNIILHSLKIHDIKAANGGIIRDSTTHQGFRTRSDGDGISLFGA
VNVWIDHISMSNCQDGLIDLVNCSTAVTISNCHFTHHNDVLLFGASDTNPQDEIMQVTVV
FTHFGKGLVQRMPRCRFGFAHILNNDYTHWLMYAIGGSSHPTILCQGNRFVAPADRNAKE
VTKRTHAPESEWKHWIWKSDGDLLTNGAFFVQSGDPGHKFKMTEDMISPKPGSYVSSLTR
FSGALNCVEHTPC
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggagggaattaggttttgtttcttgttttttattttttccgttccgacgatagaggcg
aatattgcccattatgatgaattttggcaaaaacgagccgaagaagcaaagagcagtgct
cgtgttgcgtaccgttctaagcccgaggaagtcatcaaccaacttaaccatgaagttcat
ttgactgtaacagggagaagaaacaacacgaggaaactgcacaaaaagtacaatgggcca
tgcatgaccacgaacccgatcgaccagtgctggaggtgcgacagaaactgggctaaaaac
cgacagaagctagccgaatgtgctcaagggtttggccggaaagccaccggtgggaaagat
gggaagatctacgttgtcacagatccatctgataacgacatggttaaccctaagccagga
actctacgacatgctgtaattcaactagaacccctttggataatattcgagcgtgatatg
gtgattcagttggctcaagagttgatcatgaccggcaataagacgatcgatggtcgtggg
gcccaagtgcacatagcacatggagcaggtcttactctacagtttgtgcaaaatataatc
cttcatagcctcaagattcatgatataaaggcagcaaatggtgggatcatcagagattca
acaactcatcaaggtttccgtacgagaagtgatggtgacgggatatcattgttcggggcc
gtaaatgtgtggattgatcatatttctatgtccaactgtcaagatggactcatagacctt
gtgaattgtagtacagcagttaccatctccaactgccatttcacccaccacaatgatgta
ctgttgtttggagcaagtgacaccaatccacaggatgagataatgcaagtaactgtagta
tttacccattttggcaaaggtttggtgcaaagaatgccaagatgccgattcgggtttgct
catattctcaacaatgactacacacactggctcatgtatgctatcggtggcagcagtcat
cctacaatcttatgccagggcaaccggttcgtagcccctgctgaccgaaatgccaaagag
gtgacaaaaaggactcatgcacctgaaagtgaatggaaacactggatatggaagtcagat
ggagatcttctgactaatggagccttctttgtacaatctggggatcctggacacaagttt
aaaatgacggaagatatgattagtccaaagcctggatcatacgtcagcagccttactcgc
ttttctggtgctcttaactgtgttgaacacaccccatgttag
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