Cynara cardunculus var. scolymus (artichoke): 112510846
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Entry
112510846 CDS
T05604
Name
(RefSeq) polyadenylate-binding protein 2
KO
K13126
polyadenylate-binding protein
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015
mRNA surveillance pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112510846
09123 Folding, sorting and degradation
03018 RNA degradation
112510846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112510846
03041 Spliceosome [BR:
ccav03041
]
112510846
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
112510846
mRNA cycle factors
Stress granule specific factors
112510846
Spliceosome [BR:
ccav03041
]
Complex C
Other components
Complex C specific factors
112510846
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_RdRP1_2
RBD_DGKtheta
Motif
Other DBs
NCBI-GeneID:
112510846
NCBI-ProteinID:
XP_024971963
LinkDB
All DBs
Position
LG_4
Genome browser
AA seq
509 aa
AA seq
DB search
MAEMSVTRALTRMVCPSTFAPVNGFVNSSLYVGDLDGNVTEGQLFDLFSTVGRVASVRVC
CDREKGVSLGYGYVNYNNAQDAKKAQELLNFTRINGKQIRIMFSNRDPSTRKSGIGNVFV
KNLDSSIDNKFLYDTFAVFGTVLTCKVAVNSNGESKGYGFVQFDREEVAQTAIRTLNRKL
MNDKRVYVGPFIRQEERRNIANVYEIIREANLYMKNLDESITDDMLEELFSEFGTIKSCK
VMLDPKGVSKGFGFVAFSKPDEAKRAMDEMKGKMVGRKPLYVTIAQPKAERMALLRAHFG
PSWVHPGAPNLAPQPLYLGQGGPRLLPRPGYGIMTGVHSSNFLMIPYVPLRRGRSENHSA
PISPPSPHAMSRQPMPDGPSQLFRHVFSGRFVADNRMVEALMDNDVFQVPFDIASSSSQV
NLQLSGPIDHRGKFASVLAFATPQNQRWILSEHLFPLVEQIERENAAKVTEMLLDSMDLT
EVIHLIESPEALKTKVAEAMETIISRVEF
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggcggagatgtctgtgacaagggcacttacgaggatggtctgcccttcaacatttgcg
ccagttaatggttttgtgaacagttcgttatatgttggggatttggatggtaacgttacc
gaaggccaattgtttgatctcttcagtacagtggggcgagttgcttcagttagggtttgt
tgtgatcgagagaaaggggtttcacttggctatggctatgtgaattacaataacgcacaa
gatgctaaaaaagctcaagagcttttgaacttcacaaggattaatggaaaacaaatcagg
atcatgttttcgaatcgcgatcccagcacgcgaaaaagcgggatcggcaacgttttcgtg
aagaatttggattcatcgatcgataacaagtttctatacgacacctttgctgttttcggt
accgtgcttacttgtaaagttgctgttaatagcaatggtgaatcaaaagggtatggattc
gtacagtttgatcgcgaagaagttgcacaaactgcaataaggacgttaaatagaaagttg
atgaacgataagcgagtttatgttggcccgtttattcgccaagaagaaagaaggaatatt
gcgaatgtgtatgagattattagagaggctaatttgtacatgaaaaatcttgatgaaagc
ataaccgatgatatgttggaggagttgttttccgagttcggaaccataaaatcttgcaag
gtcatgcttgatccaaaaggagtgagcaagggttttggatttgttgctttttcgaaaccg
gacgaggctaagagggctatggatgagatgaaaggaaagatggtcgggcgcaaacccttg
tatgtcacgatcgctcagcctaaagccgaaagaatggctctactacgggcacattttggt
ccaagttgggttcatcctggtgcacctaacctagccccccaaccactatatttgggtcaa
ggtggtccacggttgctacctcgtcctggttatgggataatgactggtgttcactcttca
aatttcttgatgatcccttatgtgcctctaaggcgaggtcgatcggagaatcactcggct
ccaataagcccaccgagcccacatgctatgtctcgacagccgatgcccgatggcccgagc
caacttttccggcatgtgtttagtgggcgatttgttgcggacaatcgtatggttgaagct
ctcatggataacgacgtgtttcaagtgccttttgatattgcatcgtcgtcgtcccaagtt
aatctccagctttccggaccaattgatcaccgcggaaaatttgcttcggtgttggctttc
gctactccgcaaaaccaacgatggatcctcagcgaacacctattcccgttggtggaacaa
attgagcgcgagaatgcagctaaggtaactgagatgttgctcgattcgatggatctaacc
gaagttattcatctaatcgagtctccggaagctcttaagacgaaggttgcagaggccatg
gagacgattatttctcgtgtcgagttttag
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