Cynara cardunculus var. scolymus (artichoke): 112510920
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Entry
112510920 CDS
T05604
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav00040
Pentose and glucuronate interconversions
ccav01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112510920
Enzymes [BR:
ccav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112510920
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
112510920
NCBI-ProteinID:
XP_024972044
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Position
LG 1:11841802..11843635
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AA seq
410 aa
AA seq
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MATTFPPLMILFLISSLSLLTINATSSPSHHQNPDSIVDEVNDSINNSSRRNLGYLSCGT
GNPIDDCWRCDSNWASNRQRLADCAIGFGKNAIGGRNGQIYVVTDPGNDNPVNPVPGTLR
HAVIQDVPLWIIFKRDMVIQLRQELVMNSFKTIDGRGVNVHIGNGPCITIHYATNIIIHG
IHIHDCKQAGNGNIRNSPHHSGWWTQSDGDGISIFASQHVWVDHCSLSNCHDGLIDAIHG
STAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVV
NNDYTHWEMYAIGGSANPTIYSQGNRFMAPNTRFDKEVTKHESAAESEWKNWNWRSEGDL
MLNGAYFRESGRGSASTYARASSLSGRPSTLVAGMTRAAGALICRKGSHC
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggccaccacttttccgccattgatgattctcttcctaatttcttcactttctcttctc
accattaatgctacttcttccccatctcatcatcaaaaccctgattccatcgtcgatgaa
gtcaacgacagtattaataattcctcccggagaaacttaggttatctctcctgcggcacc
ggcaacccaatcgacgactgctggaggtgtgactccaactgggcctctaatcgtcaaagg
ctagccgattgtgcgattgggttcggaaagaacgcaatcggcgggaggaatggccagata
tacgtcgtcactgatcccggaaatgataatccggtgaacccagttcccggaacactcaga
catgccgtcattcaagatgtgccattatggatcatctttaaacgtgatatggtcattcaa
ctacgtcaagagcttgttatgaattcatttaaaaccattgatggaaggggtgtgaatgtt
catattggtaatggtccatgcatcaccatacattatgctactaacatcatcatacatggc
atccacatacatgattgtaaacaggctgggaatggtaacatcagaaactcaccacatcat
tctggatggtggactcagtctgatggtgatgggatctccatttttgcaagccaacatgtt
tgggtggatcattgttcattgtcgaattgccatgatggattgatagatgccatccatgga
tctacagccatcaccatttctaacaattacatgactcatcatgataaggttatgcttttg
ggacatagtgatagttacacacaggataagaacatgcaagttactattgctttcaaccat
tttggtgaaggtttagtccaaagaatgccaagatgtagacatgggtatttccatgtggtg
aacaatgattatacccattgggaaatgtatgcaattggaggaagtgcaaaccctaccatc
tacagccaaggcaacagatttatggcacccaataccagatttgacaaagaggtgacgaag
catgagagtgcagcagaaagtgaatggaagaattggaactggagatcagaaggggatttg
atgttgaacggagcgtatttcagggaatcgggtcgaggttctgcttcaacttatgcgaga
gcttcgagtttaagtggaagaccgtcgacgctggtggctgggatgacgagggccgccggt
gcactcatttgcagaaaaggctcgcattgttga
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