Cynara cardunculus var. scolymus (artichoke): 112511087
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Entry
112511087 CDS
T05604
Name
(RefSeq) golgin candidate 5-like isoform X1
KO
K20286
TATA element modulatory factor
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccav04131
]
112511087
Membrane trafficking [BR:
ccav04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
112511087
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TMF_TATA_bd
TMF_DNA_bd
DUF7491
Motif
Other DBs
NCBI-GeneID:
112511087
NCBI-ProteinID:
XP_024972265
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All DBs
Position
LG 4:19136730..19150706
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AA seq
1026 aa
AA seq
DB search
MAWFSGKVSLGNFPDLAGAVNKFSESVKNIEKNFDSALGFEDKAGGTTSTAEASGSWPAD
LMAFMGQKGEDGTVESMEKLESSSPQHTSFSKEKEGDQADNPANATDEHYQSVREEKAET
LKPEEHKDHPAETNIDVLEEANSEKPAKKNIEVLEEANCKKPTESSIALSEDADIADKPL
EINVAISEYAENVAEKSAATNIAVSDETTTTAADHSEAEVDSRAELSADHAEQSEFVVRV
LSRDSSEVGSSKKSESIQDESTNLSDQVVVTSELNEVHPAPDLPKDEDGLKIQLEEASQE
VSAVEVVKPSYDGQDGIVTELNEVQSVIHETTKVAEEGQLHSLQSSDDVSSVVPEVVPKE
NNANDEIHIPSELTSDNQSDIKEKHLSSESNSSDNADCMVELEKVKREMKMMETALLGAA
RQSQAKADEIAKLMTENEHLKSIIEDQRRKSNEADIESLREEYHQRVSTLERKVYALTKE
RDTLRREQNKKSDAAALLKEKDEIITQVMAEGEALSKKQAAQESQIRKLRAQIREFEEEK
KGLIAKLQVEENKVESIKKDKAATEKLLQETIEKNQAELATQKEYYTNALSAAKEAEALA
EAQANSEARTELQSHLREAEEREVMLVQTLEELRRTLSRTEQQAVFREEMLMRDVEDLQK
RYQASERRCEELVMQVPDSTRPLLRQIEAMQENTARRAEAWTAVERSLNSRLQEAEAKSA
AAEERENSVNERLSQTLSRINVLEVQISCLRAEQTQLTRSLEKERQKAAENRQEYLALKE
EADTHEDHVKRLEEEMRELNRKHKQELHEALTHQELLQQDIEREKAARLELETTTRLQSS
IVPEQSPITRTKSSYENGLTRRVSGTSSLGSMEESFYLQASLDSSDTFSERRNPGEPTMN
SYYLKSMTPNAFEAALRQKEGELASYMSRLASMESIRDSLAEELVKMTEECEKLRSEVSL
LPGLKADLEALRRRHSAALELMGERDEELEELRADIVDLKEMYREQVNMLVNKIQVLSSS
SISASA
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggcttggtttagtgggaaggtctcgttggggaacttcccggatttagctggagctgtt
aacaagttcagtgagagcgtcaagaacattgagaagaactttgacagtgctcttggtttt
gaagacaaggctggtggtactacttccaccgctgaagcttcagggtcatggcctgccgat
ttgatggcctttatgggacagaaaggtgaggatggcactgttgagtccatggaaaaactt
gaatcttcaagtcctcaacatacatccttttccaaggaaaaggaaggagatcaggctgat
aatccagccaacgctactgatgaacattaccagtctgttagagaagaaaaggcagaaact
ttaaagcctgaagagcataaggatcaccctgcggaaacaaacatcgatgttttggaggag
gctaatagtgaaaaacctgccaaaaaaaatattgaagtcttggaggaggctaattgcaaa
aaacctacggaatcaagtattgcactttctgaggatgcagatattgctgacaaacccctg
gaaataaatgttgcaatttctgagtatgcagagaatgttgctgaaaaatctgcagcaaca
aatattgcagtatctgatgagacaactactactgctgctgaccacagtgaagctgaagtg
gattcacgagcagaattaagtgcagatcatgctgaacaatcagagtttgtggtccgtgtt
ctcagtagggatagttccgaagttggctcttcaaaaaagtctgaatcaatacaagatgag
tcaacaaatctctcagaccaagttgtagttacctctgagctaaatgaagtgcaccctgct
cctgatttaccaaaggatgaggatggactgaagatacagttagaagaggcttcacaggaa
gtttctgcagttgaagtggtgaaaccttcatatgatggccaagatgggattgtgactgag
ctaaatgaagttcaatctgtcatccatgagacgactaaagttgctgaagaaggccaactg
cattcattacaaagttcagatgatgtctcttcagtggttcctgaagtagttccaaaggaa
aacaatgcaaatgatgagattcatataccaagcgagctaactagtgacaatcaaagtgac
ataaaggaaaaacacttgagttcagaaagcaattcatctgacaatgcagattgtatggtt
gaacttgagaaggtgaagagggagatgaaaatgatggagactgcacttctaggggctgct
cgacaatctcaggcaaaagctgatgaaattgcaaagctgatgaccgagaatgagcatctg
aagtctataattgaggatcagaggagaaaatcaaatgaagcggatattgagtctctacga
gaagagtatcatcaaagggtctcaactcttgaaagaaaggtttatgctctcacaaaggaa
agagatacactacgtagagagcaaaataagaaaagtgatgctgctgctcttctgaaagaa
aaagatgaaataatcactcaagttatggcagaaggtgaagcgctttcaaagaaacaagct
gctcaagaatctcaaattaggaaattgcgggcacagattagggagtttgaagaagagaag
aaaggattgatcgccaaactgcaggttgaagagaacaaagtagagagtataaagaaggat
aaggcagccacagagaaacttctgcaagaaacaatagagaaaaaccaggctgaacttgct
acacaaaaagaatattatacaaatgcattgagtgcagccaaggaagctgaagcattagca
gaggcgcaagctaacagtgaagccagaaccgagctacagagtcacctaagagaggccgag
gaacgtgaagtcatgttagttcaaactctagaagagttgagacgaactctgagcagaacg
gagcagcaggcagtttttagagaagagatgcttatgagagacgttgaggaccttcaaaaa
agataccaagcaagtgagcgtagatgcgaagagttggtcatgcaagttcctgattctact
agacctcttttaaggcagatagaagctatgcaggaaaatacagctagaagagcagaagct
tggactgctgttgagagatcactaaactcgcggcttcaggaagcggaggccaaatctgca
gctgcagaggaaagagagaactctgtaaatgaacgcctatcccaaacattatctcggata
aatgttcttgaagttcagatatcatgtttaagagctgagcaaacacaattaactaggtca
cttgagaaggaaagacagaaagcagcagaaaatcggcaggagtacctagcattaaaagag
gaggctgatactcatgaagatcatgtgaaacgacttgaagaagagatgagggaactcaat
agaaaacacaagcaagagctacacgaagcattgacccaccaggaacttctccagcaggat
atagaacgcgagaaggccgcacgtttagaactggaaaccacaactcgtcttcagtcttct
attgttcctgaacaaagtcccataaccagaactaagtcttcctatgaaaatggcttgact
cgcagagtttcaggtactagcagtttaggtagtatggaggaaagtttttatctgcaggca
tctttggactcgtctgatactttctctgaaaggagaaatcctggagaacctaccatgaac
tcatattatttaaagagtatgactccaaatgctttcgaagctgccctacgtcaaaaggag
ggtgaacttgcatcttatatgtctagattggcatccatggaatccattcgcgactctctt
gccgaggagttggttaaaatgactgaggagtgtgaaaaattgcggtcggaagtgtctctg
ctgcctggcttgaaagcagacctagaagcactaagacgcaggcactctgcggcactggag
ttgatgggggaacgagatgaggagcttgaagagcttcgtgctgatattgtggacttaaag
gagatgtacagagaacaagtaaacatgcttgtaaataagatccaggtgttaagttcatca
tcgattagtgcttctgcttaa
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