Cynara cardunculus var. scolymus (artichoke): 112511147
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Entry
112511147 CDS
T05604
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase isoform X1
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccav03016
]
112511147
Enzymes [BR:
ccav01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
112511147
Transfer RNA biogenesis [BR:
ccav03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
112511147
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Motif
Other DBs
NCBI-GeneID:
112511147
NCBI-ProteinID:
XP_024972388
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All DBs
Position
LG 4:complement(11682689..11699611)
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AA seq
610 aa
AA seq
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MEDIEDLLVGGGAAPPGFRLPITAAVGINPMKKKKSNKLEPSSLLQNSSTCQVPGTQTIF
LKTFGCSHNQSDSEYMAGQLSAFGYAISDNAEGADLWLINTCTVKSPSQSAMDTLISKCK
SAKKPLVVAGCVPQGSRDLKELEGVSVVGVQQIDRVVEVVEETLKGHEVRLLNRKTLPAL
DLPKVRKNKYVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVGRVKSVVNDGVKEIW
LSSEDTGAYGRDIGVNLPILLNAIVSALPTNGSTMLRIGMTNPPYILEHLKEIAEILCHP
CVYSFLHVPVQSGSDAILTAMNREYTVGEFRKVVDTLTELVPGMQIATDIICGFPGETDE
DFAQTVDLIKDYKFSQVHISQFYPRPGTPAARMKKVPSHIVKKRSRELTSVFESFTPYDA
MEGNVERIWITDIATDEMHLVGHTKGYVQVLVVGPESLLGSSAMIKITSVGRWSVFGDII
QILDDRSGVTSPSDKKDTNNKAKCVEDTCGCSLAKPEPCACESDACEPNGCCNIAENDSY
PEVENGRNLGGLLLRKKPLRPMVELEDNGNHKLAVSNVRDRDWGLLDNVLVGGIFMSLLT
IVVLVLYVGS
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggaagacatcgaggatttgttggtcggtggtggcgcagctccaccaggtttccgacta
cccattacagccgccgttggaataaatccaatgaagaagaagaaaagtaataaactagag
ccatcatctttgcttcaaaactcctcgacatgtcaagtccctggcacccagacgattttt
ttgaagacatttgggtgctcgcataaccagagtgatagtgagtacatggccggccaactt
tcagcatttggctatgctatcagtgacaatgcagaaggagcagatctttggctgataaat
acttgcacagtaaaatccccaagccagtcagccatggacacattgatatcaaaatgtaaa
agtgcaaaaaagccacttgtagtggcaggatgtgtgccacaaggaagtcgggatctgaaa
gagcttgaaggtgtcagtgtggttggagttcagcaaattgatcgggtcgtagaggttgtt
gaggagacccttaaagggcatgaggtccgactattgaatcgcaaaactctcccagcactc
gatcttcctaaggtaaggaagaacaaatatgtagaaattcttccgataaatgtcggttgt
ttgggggcttgcacttattgcaagacgaagcatgctcgaggtcatctaggaagctatacg
gttgacagccttgtgggacgtgtcaaaagtgttgtaaatgatggagtcaaagaaatttgg
ttgagcagtgaagacactggggcatatggtcgtgatattggagtaaatcttccaattttg
ttgaatgcaatcgtctcagcactccctacaaatgggagcacaatgctccgcattgggatg
actaaccctccttatattctggagcacttgaaggagatagccgaaatcttgtgtcaccct
tgtgtttattcatttcttcatgtacccgttcaatctgggagtgatgctatcttaactgca
atgaatcgagaatatacagtaggcgagttccggaaggtagtggatacgttgactgaactt
gttcctgggatgcagattgcaactgatattatttgtggatttcctggtgaaacagatgaa
gattttgctcaaacagttgatttaatcaaggactacaagttttcccaagttcatatctct
caattctatcctcgaccaggaaccccggctgcaaggatgaagaaggtgcctagtcatata
gtgaagaaacggagtcgtgaactgacttcagtctttgaatcgtttacgccttacgatgct
atggaaggaaatgtcgagaggatatggattactgatattgcaactgatgaaatgcacttg
gtcggccacaccaagggatatgtgcaggttctggttgtcggtcccgaaagtttgctcggg
tcttcagcaatgataaagataacttcagttggacggtggtccgtttttggggacatcatc
cagatcctcgatgatagaagtggggtcacaagtccaagtgacaaaaaggatacaaacaac
aaagcaaagtgcgtagaagatacttgtggatgttcattggcaaagccagaaccttgtgct
tgtgaatctgatgcttgtgaacccaatggttgttgcaatattgctgaaaatgactcatac
ccagaagttgaaaatggccgaaatcttggaggtttattgttgcgaaagaaacctttacgg
ccaatggtggaattagaagataatgggaatcataaacttgctgtaagcaatgtgcgtgat
cgtgattggggtcttcttgataacgttcttgtaggtgggatttttatgagcttattgacg
atagtagtgctagttttgtacgtgggttcttga
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